Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00308 ATGTCAAATTCCATGactcatcaaaatcaatttgaGAACCAAGAGTTACTAGGTAGTGGTTATGTTTCATCTTCTTTAAGGAACAATAATGCATCATCATATCACGAATCACTTGGAACATTTTCTAACAACATTGAACTAACACAAGGTTCTGAGATGAGTCATACAAGACATTTGATGGATCTACTTGGAGCAACAAATGAGAACAATCACCAAACACAACATGCTCTATCACTTTCTTTAGGTTCTCATATGCTTGTTGATGAATACAACACAAACCGTTCTTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGTCTGGTCAACATCATCAGACACGTTCTGATCAACCTTGTAATCAACCTGTTGTGGAGAATCTAacaagtgattatttttatagtaGTGGTGGAAGTGGAAGTGGAAATTTTGCTTCTGGTTCTAATAACTCAATGTTGAACCGTTCTACTTCTACTTCTTATGGAGGTGAAAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCTGTACAGTCACTTCTTCAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAGTTGTTTCATGGAAGTAGAACTGGTGCTAGAACACTCTCCTCTGAGCTTAAAGCAGAGTTAAGGATTCATGGACATTTATTGGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGTTCATTGCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCATTTGAAATGATAGCAGGTATAGGAGCTGCAAAGTGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTTTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTGGAGAAAAGAAAACTGTTTCAAGATGTACCAAAAATCAACAGTGGATTGTCTCAACTGAGCTTATTtgagaaagataataataaacaGAATAGAATGTCTCTTCAACAACTTGGAGTCATTCAAAATCAACGACAAGTGTGGAGACCCATTAGAGGATTGCCTGAAACTTCTGTAGCTATTCTTCGTGCTTGGTTATTTGAGCATTTTCTTCACCCCTACCCTAATGATTCTGAGAAGTTAATGCTGGCATCCCAAACAGGCTTAACTAAAAACCAAGTGTCAAATTGGTTCATAAATGCAAGGGTACGTCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCTGAAGATTCCAACCCAGCAGCTAACAATTACATGTCAAGGGAAGATGCAACTGACTGTGTGGAGgattga 1353 0.354 MSNSMTHQNQFENQELLGSGYVSSSLRNNNASSYHESLGTFSNNIELTQGSEMSHTRHLMDLLGATNENNHQTQHALSLSLGSHMLVDEYNTNRSLNQGLMINPSYFMSGQHHQTRSDQPCNQPVVENLTSDYFYSSGGSGSGNFASGSNNSMLNRSTSTSYGGESFGSVIGNSRYLKPVQSLLQDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKFIALLDEVESRYEKYYHQMEEVVSSFEMIAGIGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINSGLSQLSLFEKDNNKQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAANNYMSREDATDCVED 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00308 450 SUPERFAMILY Homeodomain-like 360 421 IPR009057 -
Tsu07g00308 450 SMART HOX_1 354 418 IPR001356 GO:0003677
Tsu07g00308 450 Gene3D - 349 429 - -
Tsu07g00308 450 Pfam Homeobox KN domain 371 410 IPR008422 GO:0003677|GO:0006355
Tsu07g00308 450 Pfam Associated with HOX 170 302 IPR006563 -
Tsu07g00308 450 SMART prehox3 165 303 IPR006563 -
Tsu07g00308 450 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 7 434 - -
Tsu07g00308 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 434 - -
Tsu07g00308 450 CDD homeodomain 354 415 IPR001356 GO:0003677
Tsu07g00308 450 MobiDBLite consensus disorder prediction 423 450 - -
Tsu07g00308 450 ProSiteProfiles 'Homeobox' domain profile. 373 414 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00308 Tsu-Chr7 2373161 2375875 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu07g00308 POX 3.6e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00308 07 2373161 2375875 Tsu07g00308 07 2373161 2375875 ECH
Tsu07g00308 07 2373161 2375875 Tsu01g00262 01 2176557 2180594 PCT