Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00300 ATGATGAAATCGGACATGGAAGTCGAGGAGAGAAAAAAGTTGAAGAAGGCATCACAGGCCAACTCCAGAAAAGGTTGTATGAAAGGTAAAGGAGGCCCTGAAAACGCGAGTTGCACTTACAAGGGCGTGAGACAGAGAACTTGGGGTAAATGGGTTGCTGAAATCCGTGAACCCAATCGGGGTGCTCGCCTTTGGCTTGGGACATTTAAAACATCTAGTGAAGCTGCCTTGGCTTATGATGCTGCTGCGCGTAAGCTTTATGGATCAAGGGCCAAGCTCAATCTACCTGAAATCTCTATGTCGGTGAAATCTCAGGGTCAACAATCTCTCCATGACCCTCAAATCGTCAATATGGAAGATCCGTGCCCGCCTCAAATTAATCACAACGTAGATATGGTCACGAGTTCCGATTTCAACACCAACATGAACCCTACAATACCAATGGCTTCTCAACCATCACACAATAATGATTGTGCACCCTCTTTACCCTTGGATAACAACCCTAATCCAACTGATCCAACCTTTGAGGATTTTTTGCCATCTCTGGAAACAATGAATGGTGGTTTCTCAAGTTTAAGTGATTCCATATGGCCAGATGATGCCATGCCAATAGATTTTCCTATTAATTATGCAAATTCTGGGATTTTTACAGAGGCAAACATGGGAGATGGAAATGTTTGGGACTCATTGCAGACTCCATGGTGCATGTAA 711 0.4402 MMKSDMEVEERKKLKKASQANSRKGCMKGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFKTSSEAALAYDAAARKLYGSRAKLNLPEISMSVKSQGQQSLHDPQIVNMEDPCPPQINHNVDMVTSSDFNTNMNPTIPMASQPSHNNDCAPSLPLDNNPNPTDPTFEDFLPSLETMNGGFSSLSDSIWPDDAMPIDFPINYANSGIFTEANMGDGNVWDSLQTPWCM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00300 236 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Tsu07g00300 236 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Tsu07g00300 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 226 - -
Tsu07g00300 236 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 MobiDBLite consensus disorder prediction 1 16 - -
Tsu07g00300 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 226 - -
Tsu07g00300 236 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tsu07g00300 236 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00300 Tsu-Chr7 2318356 2319066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu07g00300 AP2 4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00300 07 2318356 2319066 Tsu07g00300 07 2318356 2319066 ECH
Tsu01g00258 01 2139675 2140555 Tsu07g00300 07 2318356 2319066 PCT