Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02441 ATGCGAATGAGTTGTAATGGTTGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTttggattggattaaatgtCCTCAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAACCTCATCAATTCTGCCTCTGAAAATCATCGTCCAgcaATTTTTCGATCATTGCTACATGAGGCTTGTGGGAGGATTGTGAACCCGGTTTACGGTTCAGTGGGTCTTCTATGGTCTGGTAGCTGGCAGCTCTGTCAAGCCGCTGTTGAAGCCGTGTTAAAAGGGGAGCCAATTACGCCAATTGCTTCGGAGGCTACGCATGGCCCACCTTTCAAAGCATACGACATACGCCATGTGGCGAAAGATGATAACTTGGATGAGACTCATCGAGTCAAGACTCGATCTCGCTTCAGACGAGCTGTGAAGCCAAAGCCAAGTAAGAAAACTGGTTCAGGCAAAGATGTGAACCGGTCTGAATCATCGCTTAGCCAACCTAGCAAGGATAGTGAGAGCGGGGTTTCAGTGGAAACTTCGATTCTTTTTCATGATGAACCGGAGTCGGAAGCTAAAGTATGTGGTCGAGCCGATGATGGTGTGAATAATGAGGTTGGTTTGGAGCTTAGGCTTGGGTTCGAACCCATTGATTCATTCAAACCACGTGAGGAGCACGTGGTTCCCataaagaagagaaaatttGATTGGAAGGATATTAATGTTTCTTGCAAAGTGGAGCTTGGGCTTGAGTTTGCAGCTTAA 789 0.4373 MRMSCNGCRVLRKGCSEDCSIRPCLDWIKCPQSQANATLFLAKFYGRAGLINLINSASENHRPAIFRSLLHEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPITPIASEATHGPPFKAYDIRHVAKDDNLDETHRVKTRSRFRRAVKPKPSKKTGSGKDVNRSESSLSQPSKDSESGVSVETSILFHDEPESEAKVCGRADDGVNNEVGLELRLGFEPIDSFKPREEHVVPIKKRKFDWKDINVSCKVELGLEFAA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02441 262 PIRSF AS2 138 262 IPR017414 -
Tsu06g02441 262 PIRSF AS2 1 153 IPR017414 -
Tsu06g02441 262 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 259 - -
Tsu06g02441 262 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tsu06g02441 262 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 259 - -
Tsu06g02441 262 MobiDBLite consensus disorder prediction 166 186 - -
Tsu06g02441 262 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Tsu06g02441 262 MobiDBLite consensus disorder prediction 136 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02441 Tsu-Chr6 31262960 31264097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02441 1 258 AS2 family AT3G02550 52.574 2.72e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g02441 LOB 4.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02441 06 31262960 31264097 Tsu06g02441 06 31262960 31264097 ECH
Tsu01g04893 01 55929009 55930329 Tsu06g02441 06 31262960 31264097 ECH