Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02223 ATGGCAGTCATTGCATTAAAGTGTCCATCCATTGAAGTAGTGGTCGTCGATATCTCGAAATCGCGCATTGCAGCATGGAACAGTGATAAGCTTCCTATCTATGAGCCAGGTCTTGATGACGTAGTAAAGAAATGTCGCGGCAAGAATCTTTTCTTCAGCACTGAAGTTGAGAAACATGTCTATGAAGCCGACATAGTGTTTGTATCCGTCAACACACCGACAAAAACTCGCGGTCTTGGGGCTGGAAAAGCAGCCGATTTAACATATTGGGAGAATGCGGCTCGGATGATTGCCGATGTTTCCAAGTCTGACAAAATTGTGGTAGAGAAATCAACTGTTCCTGTTAAAACTGCTGAAGCTATAGAGAAAATTATGACACACAATGCAAAAAGTATCAAATTTCAGATTCTGTCAAACCCGGAATTTCTCGCCGAGGGAACTGCAATTCAAGACCTTTTCAATCCAGACAGAGTTCTCATCGGAGGCAGAGAAACCCCGGAAGGCGAAAAAGCAATTCAAACGTTGAAAAGTGTTTATTCTCAATGGATTCCAGAGGGAAAAATCTTGACCACAAATCTTTGGTCAGCAGAACTTTCTAAGTTAGCTGCTAATGCCTTCTTAGCTCAAAGGATTTCATCCGTCAATGCATTGTCAGCACTTTGCGAAGGGACCGGCGCAAATGTTAACCAAGTTTCCTACGCAGTTGGTACCGACACAAGAATCGGACCAAAGTTTTTGAATGCAAGCGTCGGTTTCGGCGGTTCTTGCTTCCAAAAAGATATCTTAAACCTTGTTTACATTTGTGAGTGTAATGGTTTACCAGAAGTTGCTGAATATTGGAAACAAGTTATCAAGATCAACGATTATCAGAAGAGTCGGTTTGTGAACCGGGTAGTGGCATCGATGTTTAACACGGTTGCTAACAAAAAGATAGCTATATTAGGATTTGCATTCAAGAAGGATACCGGTGATACACGCGAGACGCCAGCTATTGATGTGTGTAAAGGGCTACTCGGTGATAAAGCGCGTGTGAGTATATTCGATCCGCAGGTAACTGAAGATCAAATACAAAGGGATTTGTggatgaataaatttgattgggATCATCCTATACATTTGCAGCCAACTAGTACTCCTTCAAATGAGAAGAATGTGAGTGTGGTTTGGGATGCTTATGAAGCAACAAAAGATGCAGATGGTGTTTGCATATTAACTGAATGGGACGAGTTTAAGAAACTTGATTATCAGAAGATTTATGATAATATGAGAAAACCAGCATTTGTTTTTGATGGAAGGAATGTTGTTGATTGTGATAAGCTACGTGAGATTGGTTTCATTGTTTATTCAATTGGTAAGCCACTTGATCCATGGCTTAAAGATATGCCAGCTGTGGCTTAA 1398 0.4049 MAVIALKCPSIEVVVVDISKSRIAAWNSDKLPIYEPGLDDVVKKCRGKNLFFSTEVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWENAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIMTHNAKSIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGEKAIQTLKSVYSQWIPEGKILTTNLWSAELSKLAANAFLAQRISSVNALSALCEGTGANVNQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVANKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARVSIFDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSTPSNEKNVSVVWDAYEATKDADGVCILTEWDEFKKLDYQKIYDNMRKPAFVFDGRNVVDCDKLREIGFIVYSIGKPLDPWLKDMPAVA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02223 465 PIRSF UDPglc_GDPman_dh 1 452 IPR017476 GO:0016616
Tsu06g02223 465 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 312 436 IPR014027 GO:0016616|GO:0051287
Tsu06g02223 465 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 194 288 IPR014026 GO:0016616|GO:0051287
Tsu06g02223 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 198 IPR036291 -
Tsu06g02223 465 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 298 448 IPR036220 -
Tsu06g02223 465 SMART UDPG_MGDP_dh_C_a_2_a 312 437 IPR014027 GO:0016616|GO:0051287
Tsu06g02223 465 Gene3D - 1 192 - -
Tsu06g02223 465 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 194 293 IPR008927 -
Tsu06g02223 465 PIRSF UDPglc_DH_euk 1 465 IPR028356 GO:0003979
Tsu06g02223 465 Gene3D - 225 462 - -
Tsu06g02223 465 Gene3D - 193 224 - -
Tsu06g02223 465 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 465 IPR028356 GO:0003979
Tsu06g02223 465 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 465 - -
Tsu06g02223 465 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 10 433 IPR017476 GO:0016616
Tsu06g02223 465 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 170 IPR001732 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02223 Tsu-Chr6 28021906 28023303 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02223 06 28021906 28023303 Tsu04g00217 04 1971158 1973932 PCT