Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01488 ATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCATCCTACTGATGAAGAGCTTCTTTACTATTATCTAAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAACCTTGGGACCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGATTCTGGAAAGCAACAGGAAGGGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTCTTTTACACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTATCGTCTTGATGAAGATGATACTGCTGAAGTTCAGgAAGATGGATGGGTTGTATGCAGGgtattcaaaaagaaaaacacaaacagAGGTTACCAAcaagaaattgaagaagaagatcacATAATTAACCACATGAGATCAACAAATACTCAAAGCCATTTTCTAGAACCAAAACATAATCATCACCACATGCAACAATTAGGACTATATGAttacaacaataacaacaccACCTTTGATGGCACAATTCATCTACCACAATTATTCAGTCCAGAATCATCAGCACTAGCACCACCACCGCCGCCAACTTCTTTTCATAATTCATCAATGGATATCCTTGAATGTTCTCAAAACTTGTTGAGACTCACAACAACTACTCCTAATCTCATGCAACAACATCATGGTGGTGATTGGTCATTTTTGGATAAACTACTGGCATCTCACAATGGAATGGATCAAAATCTAAGAAACAAATTATGTAACAGTTCTAATAATCATCAAGTTGCAGTTGCTTCTGCTGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA 1008 0.3571 MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDEDDTAEVQEDGWVVCRVFKKKNTNRGYQQEIEEEDHIINHMRSTNTQSHFLEPKHNHHHMQQLGLYDYNNNNTTFDGTIHLPQLFSPESSALAPPPPPTSFHNSSMDILECSQNLLRLTTTTPNLMQQHHGGDWSFLDKLLASHNGMDQNLRNKLCNSSNNHQVAVASAVGSTSAQKFPFHYLGCESHDIMKFSK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01488 335 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Tsu06g01488 335 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Tsu06g01488 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 304 - -
Tsu06g01488 335 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Tsu06g01488 335 PANTHER PROTEIN SOMBRERO 6 304 - -
Tsu06g01488 335 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01488 Tsu-Chr6 15334593 15337038 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g01488 NAM 7e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01488 06 15334593 15337038 Tsu06g01488 06 15334593 15337038 ECH