Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01046 ATGTATCCACAAACTCCATTAATTATCACATTTTTCATTATCCTCTTATTAGTCATATGTAAGGGCTCTTACATAGTGGAACCACTTTATCATCAAACAAATTCTAAATACTACTACCATGTACATGATGGTAGATtgatcaaaacaaaacatcaacATTTTGGTCACATAACAAGAACCAATAGAGATaccattttttcttcaaagtctCAAGGAACGGTTAATGTTGATGACTTTGGAGCCAAAGGAGATGGAAGTGATGATAGAGAgGCATTTAAGAAGGCATGGAATGAAGCATGTTCAAAAGGAGCTATTCTTGTGGTACCAAATAGGATATATCGTCTCAAGCCAATAACTTTTTCAGGTCCATGTCAACCAAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGCCTCAAATGTCAGCATATGAAGAAGATAAGCTGCACTGGATTGTGTTTGATAGTGTCTCTAATTTTAAAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAAAATTCCTGCAAATATTCCAACAATAATCTTGCTGTGACCTTCTATGATTGCAAGAATTTGAGAGTGAAAAATCTAAGGTTCAAAGATGCACAACAAATGCATGTATCATTTGAGAGATGCTTCAATGTGTTTGTTTCCAATCTTGTTATCAGAGCACCCGAGGATAGTCCTAACACCGATGGAATTCATGTGGCAGAAACACAAAATATTGACATAACAAATTCTCATATTGGGACAGGTGATGATTGTATTTCAATAGTTAGTGGATCCAAATTTGTTCGAGCTACAGATATTACCTGTGGACCTGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAAATCAGAAGCTGAAGTTTCCAATGTGATAGTGAACAGAGCCACCTTAACAGGAACAACAAATGGAGTGAGAATAAAAACTTGGCAGGGTGGTTCAGGATATgcaaaaaacatcaaatttaTGAACATAGAAATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGATCAAACACAACCATGTCAAGAACAGGGCAGAGCTGTGCAATTAAGCCATGTTTTGTACCAAAATATCAGAGGAACAAGTGCTTCAGAAGTTGCTATAAAATTTGACTGCAGCAGAGCCATTCCTTGCAGAGAAATCTACTTGCAGGATGTTATTTTAGAACCAGAAAGTGGTGGAAGTGGAACTACTGCTACATGTGAGAATGTTGGATATGTGAATAGTGGGAAGTTTTATCCTCAATGCACTCCTTGA 1305 0.3609 MYPQTPLIITFFIILLLVICKGSYIVEPLYHQTNSKYYYHVHDGRLIKTKHQHFGHITRTNRDTIFSSKSQGTVNVDDFGAKGDGSDDREAFKKAWNEACSKGAILVVPNRIYRLKPITFSGPCQPNTAFMLYGTIEAWPQMSAYEEDKLHWIVFDSVSNFKVDGGGTFNGNGKKWWQNSCKYSNNNLAVTFYDCKNLRVKNLRFKDAQQMHVSFERCFNVFVSNLVIRAPEDSPNTDGIHVAETQNIDITNSHIGTGDDCISIVSGSKFVRATDITCGPGHGISIGSLGADKSEAEVSNVIVNRATLTGTTNGVRIKTWQGGSGYAKNIKFMNIEMQNVTNPIIIDQYYCDQTQPCQEQGRAVQLSHVLYQNIRGTSASEVAIKFDCSRAIPCREIYLQDVILEPESGGSGTTATCENVGYVNSGKFYPQCTP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01046 434 PANTHER - 9 433 - -
Tsu06g01046 434 Gene3D - 58 431 IPR012334 -
Tsu06g01046 434 Pfam Glycosyl hydrolases family 28 106 421 IPR000743 GO:0004650|GO:0005975
Tsu06g01046 434 SUPERFAMILY Pectin lyase-like 71 433 IPR011050 -
Tsu06g01046 434 SMART pbh1 245 266 IPR006626 -
Tsu06g01046 434 SMART pbh1 298 319 IPR006626 -
Tsu06g01046 434 SMART pbh1 327 348 IPR006626 -
Tsu06g01046 434 SMART pbh1 218 244 IPR006626 -
Tsu06g01046 434 ProSitePatterns Polygalacturonase active site. 275 288 IPR000743 GO:0004650|GO:0005975
Tsu06g01046 434 PANTHER POLYGALACTURONASE 9 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01046 Tsu-Chr6 9547591 9551672 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01046 06 9547591 9551672 Tsu03g00466 03 3949235 3966281 PCT