Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00590 ATGGCTTTTACTTCCATACAAGCAGCTTATCTTGATGCAGCCAACTGGCAACAACATGAGCAAcagaatcatcatcaacatccgGGAAACGGTGGTTCGGTTTCTCAACAACTGTTTCAGACACCACCACCAGCACCACCACAGACACAGTCTCAACCTCATGGAGGAGCAACTACCGGAGGATCAATTAGGCCGGGATCGATGACTGACAAGGCAAGGACGGCAAACATGCCTATGCCAGAAGCAGCACTGAAATGTCCACGTTGCGATTCAACCAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCAAGACACTTTTGCAAGACTTGCAGAAGGTATTGGACGAGAGGGGGCGCTCTAAGGAACGTCCCAGTAGGCGGAGGCTTCCGAAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGAAACTCAACAAAGTCTCCAGCTAGCTCTGACCGCCAAACCGGTAGTGCTAGTTCAACAACCTCAATCACCTCCAATAACAATCACTCGTCCGCCGATATATTAGGCCTCACACCTCAAATGTCATCATTAAGGTTCATGACACCATTACATCATAATTTTAATAACCCTAATGATTATGGAGGAGGAGATTTAGGGTTAAACTATGGATTTAGTTACAtgggaggaggaggaggagtaGGTGATTTAGGAAGTGCTTTAGTTGGTGGAAATAGTAATTCaattttatcttcaaatggTTTAGAACAATGGAGGATGCCTATGCCTATGTCAATgcctcaacaacatcaacaatttCCTTTTTTGGCTAATTTGGAGGGTTCAAATGGTAATTTATACCCTTTTGAAGGAAATGTTCAAAATCATGAGATGATAACTAGTGGTGGATATGTGAGGCCAAAAGTAACTTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAAATGGAAGAAAGTATTAATAGGGGCTTTTTGGGAATTAACACCATCAACAATAATAGTAATCAAGGAAGTGAACAATATTGGAATAGTGCTGTTGTTATTGCTGGTAACTCTTCTGCTGCTAATTGGAATGATCATGTTTCTGGTTTTAGTTCTTCTTCAAATACTACTAGCAATCAAATGTAG 1125 0.3849 MAFTSIQAAYLDAANWQQHEQQNHHQHPGNGGSVSQQLFQTPPPAPPQTQSQPHGGATTGGSIRPGSMTDKARTANMPMPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTTSITSNNNHSSADILGLTPQMSSLRFMTPLHHNFNNPNDYGGGDLGLNYGFSYMGGGGGVGDLGSALVGGNSNSILSSNGLEQWRMPMPMSMPQQHQQFPFLANLEGSNGNLYPFEGNVQNHEMITSGGYVRPKVTSTSGIMTQLASVKMEESINRGFLGINTINNNSNQGSEQYWNSAVVIAGNSSAANWNDHVSGFSSSSNTTSNQM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00590 374 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Tsu06g00590 374 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 369 IPR045174 GO:0003700|GO:0006355
Tsu06g00590 374 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 12 369 - -
Tsu06g00590 374 MobiDBLite consensus disorder prediction 136 179 - -
Tsu06g00590 374 MobiDBLite consensus disorder prediction 17 73 - -
Tsu06g00590 374 MobiDBLite consensus disorder prediction 51 65 - -
Tsu06g00590 374 MobiDBLite consensus disorder prediction 125 179 - -
Tsu06g00590 374 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Tsu06g00590 374 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Tsu06g00590 374 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00590 Tsu-Chr6 5093091 5094466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00590 1 250 C2C2-Dof Transcription Factor Family AT2G37590 46.183 1.66e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu06g00590 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00590 - - pvy:116110527 296.589