Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g02865 | ATGGCGAATGCTAGTGCCCCAAACTCCAAAGACAAGACCTCAACGAGCGTACCTGTGGAAGATGAGCAAATACCATCATGGTTACAATACTATGACACTTTGTTATCAAGAGGAAAACTCGATTCTTTTGAGTCATTGAAATTATCACGGCTTGTGGTAAATCGGAACAAACAGAATCTTTTAGGAAAATGGCTAGCAGAGGATAAACTTGAATGCACTGAAGAGCTTGGTGACTTTGTGAAGAAAGTGGATAAAGACCTAGCATTGAAAATATATACTAAAGCAAGTGCCACACCAAAAGTTATTGCAGCTTTTATTGAGAGGAGGGAATTTGATAAGATTTTGACATACTCAAAGCAGGTTGGGTACACTCTTGATTACTTATTCCTTCTGAAAACAATATTGCGAACGGATGCCCAGGGTGCTCTAGATTTTGCTCTGTTGATGTTGCGAATGGAGGGGGGTTGCCCTATTGACTACAACACGATAACCGATATGTTTCTTCAGAGGAATTTGATACGCGAGGCAACTGCCTTTTTGTTGGATGTGCTGAAGGCAGACCTACCTGAACATGGACATCTTCAAACAAAGGTGCTGGAAATCAATCTCAGGACCTTTCCAAATGTTGCTGATGCTATATTGGCTAAAGGCATGTTTAGTCATTATGATCGTCCACATATTGCTAAACTTTGTGAAAAGGCCGGCCTTTTCATTAGGGCTCTTCAGAATTACACTAAGTTGCCTGATATCAAACGTATTATTGTTAATACAAATGCCATTCAACAACAGGATCTTGTTAAGTTCTTTGGAACCCTTCCCCGAGAATCGGCACTGGAGTGTATGGAACATCTTTTACTTGTCAATCTTAGGGGAAATCTTCAAATAATTGTGCAGACTGCTAAGGAATATTCTACACAGCTGGGTGTTGATGCATGCATCAAACTCTTTGAGAAATTCAAGTCTGATGAAGGACTATACTCTTTCTTGGGTGCATATTTGAGTTCTAGTAAGGATCCTGTTATTCACTTAAAGTATATTGAAGTAGCTGTTAAAACTGGACACATTAAGGAGGTAGAACGCGTGACTCGGGAATCAAACTATTATGATGCTGTGAAGACAATGAACTTTCTAATGAAGACCAACCTTCCAAATGCACAGCCATTGATTAATGTGTGTGATCGTTTTGGTTTTGTTACTCATCTCACACATTATCTCTATACTAAAAACATGCTTCATCATGTTGAAGAGTATGTTCAAAagGTCAATCCTCGAAATGCTCCTCTAGTTGTAGGACAATTGTTAGACGATGGATGCCCCGAAGATTTCATTAAAGGTCTTATACTTTCAATTCGATCTCCTTTTCCATTTCGATCCCCTTTTCCAGTTGATCCCTTAGTTGAAGAATGTGTGAAGAGGTATGCTAGTTTTCTTTCTGACCTGCATCTCCACATTACCatattattttctcatttttacgcTCTGCGTAGGAATCGTCTTCGTTTGATTACTCAGATCTTGGagaatcttgtgagtgagggGAGTAGAGATGTACATGTGCATAATGCTCTTGGTAAAATCATCATTGACAGCAATAACTATCCCAAACATTTTCTCACAACCAACCTATATTATGATTCTCGTGTTCTTGGTAAATATTGTGAGAAAAGGGACCCTAAACTTGCTGTTGTTGCTTACCAAAGGGGTAAATGTGATTATGAGCTTGTTGATGTTACCAATAAAAATTCCTTGTTCAAACTCCAAGCcagATATGTTATGGAAAGGATGGATGGATGCCTCTGGAGAACGGTTCTAAATCCTGGGAATGTGTATAGAAGGAAGTTGATTAATCAAGTGGTGTCCACTGCTTTGCCAAAATGCAAAAATCCTGACCAGGTTTCAGCTGCAGTGAAAGCTTTTATGAGTGCCAATCTTACCCATGAGGTGATTGAGATTCTCGACGAGATGGTGCTACAAAATTATGCTTTTAGAGGAAACTTCGAGCTGAAAACCTTACTGATCCTTTCTGCAATAAAGGCAGATCATTTAAGAGTCATGGGTTACATAAATAGGCTGGACAACTTTGATGGCCAAGCTGTCGGGAAGGCTGCAGTGAAAGCACATTTATATGAAGAAGCTTTTGCCAGTTTCAAGAAATTTAATCTGAATGTTGAGGCTGTTAATGTCCTGCTAGATAACCTTCAGAACATTGATCGTGCTATGGAGTTCGCATTCCGTGTTGAAGAAGATTCTGTATGGAGCCAGGTGGCTAAGGCGAAACTTAGAAAAGGCTTAGTAAGTGATGCAATTGATTTGTTCATCCGTGCAAATGATGGCACTCACTACTTAGAGGTCATTAAGGTTGCTGAAGATGCAAATAAATACCATGACCTAGTAAAGTATCTTCTCATGGTTAGGAAGAAGACCAAAAAGCCCAAGGTGGACAGTGAGCTCATTTATGCTTATGCAAAGATCGGCCAGCTTGGAGAAATTGAAAAGTTTTTATTGATGCCAAATGTTTCTAATTTGCCAAATGTTGGAGACCGATTGTATGATGAGGCGCTCTACGAGGCTGCAAAAATTATCTTTGCTTTTATTCCTGACTGGGCTAAGTTAGCAGTGACATTGACAAAGCTTCAACAATTCCAAGATGCTGTTGATGCTGCTAGGAAAGCAAACAGTTTGAAAACATGGAAGGATGTTTGTTTTGCCTGCATTGATGCTGGGGAATCCTCCTTAGCTCAGATTTGTGGTCTCAATGTTATTGTTCAGGTGGACGATCTGGAAGAAGTTAGTAAGTATTATCAGAACAGAGGACGCTTCAACGAACTCATCTCTCTAATGGAGAAAGGGCTAGAACTGGAGCGTGCCCATAATGGCATCTTTACTGAGTTGGGAATTCTTTATGCAAGATATCATCCTGAGAACTTAATGGATCACATTAAATTGTTCCCAACTCGGCTCAACATTCCCAAACTTATTCGGACATGTGATAGACAACACCTCTGGAAGGGACTCACATACCTATACATACAATGTGATCGGTTTAATAATGCTGCAACCACTGTAATGAATCACTCTCCAGAAGCATGGGACCACATGcaattcaaatttattatagttAATGTTTCCATTGTAGAACTATATTATATGGCTGTGCACTTCTACTTGCAAGAACATCCAGATATGATAAATGATCTTCTTGAAGTGCTTGCCTGTCGTGTGGACCATGCCCGTGTTGTAGATATAATGCGGAAGgCAGGCCATATCCGATTGATAAAGCCATACTTGGTTGCAGTTCAAAGCAGCAATGTGTTTGCTGTTAATGAAGCTTTGAATGAAATTTACGTTGAGGAGGAGGACTATGATAGACTTCGTGAATCAATAGATCTCTATGACAACTTCAATGAGATAGGTCTTGCACAGAAGATTGAGAAGCACGAGCTTCTTGAGATGAGACGTATTGCTGCTTATATTTACAAGAAAACTGGAAGATGGAAGCAGTCCATTGCTTTGTTAAAGAAAGACAAACTTTACAAAGACTGTATGGAAACTTGCTATCTATCTGGTGACCAGGAACTCTCAGAGGATTtgcttgtttattttattgagCAGGGGAAGAAAGAGTGTTTTGCTTCGTGCCTGTTTGCTTGTTATGATCTAATACGGCCAGATGTTGCACTAGAGCTAGCTTGGACGAACAATATGATTGATTTTTCCTTCCCATATCTCATACAGTCTATTCGAGAGTATACGAGTAAGGTGGATGAGCTTATCAAGGACAAAGTTGAAGcagaaaatgagaagaaactTAGAGAAAAGGAGCGGGAGGACATTATTGCTAAACagATTCAACCGGCGTCAAGAATTTCAGTCCGAATTCAAAGCAAGTTCAGATTGTTCTTTCAGAGAATTGGATATGttgtttcaaatatttttcaccGTGGGCGTTCAGATCATTTTGTTCAGCACTACAGCATTGTTCTTCACCAGGGCTGCAACTGTGGTCTTCAATGTGGGCGTTCAGATTGTTCTGTTAAGAAATACATCCTCCGCAGGGAATACAAGGTTTCAAACCAATCCTTTGCTAAACAGAAGTTCTAA | 4101 | 0.3882 | MANASAPNSKDKTSTSVPVEDEQIPSWLQYYDTLLSRGKLDSFESLKLSRLVVNRNKQNLLGKWLAEDKLECTEELGDFVKKVDKDLALKIYTKASATPKVIAAFIERREFDKILTYSKQVGYTLDYLFLLKTILRTDAQGALDFALLMLRMEGGCPIDYNTITDMFLQRNLIREATAFLLDVLKADLPEHGHLQTKVLEINLRTFPNVADAILAKGMFSHYDRPHIAKLCEKAGLFIRALQNYTKLPDIKRIIVNTNAIQQQDLVKFFGTLPRESALECMEHLLLVNLRGNLQIIVQTAKEYSTQLGVDACIKLFEKFKSDEGLYSFLGAYLSSSKDPVIHLKYIEVAVKTGHIKEVERVTRESNYYDAVKTMNFLMKTNLPNAQPLINVCDRFGFVTHLTHYLYTKNMLHHVEEYVQKVNPRNAPLVVGQLLDDGCPEDFIKGLILSIRSPFPFRSPFPVDPLVEECVKRYASFLSDLHLHITILFSHFYALRRNRLRLITQILENLVSEGSRDVHVHNALGKIIIDSNNYPKHFLTTNLYYDSRVLGKYCEKRDPKLAVVAYQRGKCDYELVDVTNKNSLFKLQARYVMERMDGCLWRTVLNPGNVYRRKLINQVVSTALPKCKNPDQVSAAVKAFMSANLTHEVIEILDEMVLQNYAFRGNFELKTLLILSAIKADHLRVMGYINRLDNFDGQAVGKAAVKAHLYEEAFASFKKFNLNVEAVNVLLDNLQNIDRAMEFAFRVEEDSVWSQVAKAKLRKGLVSDAIDLFIRANDGTHYLEVIKVAEDANKYHDLVKYLLMVRKKTKKPKVDSELIYAYAKIGQLGEIEKFLLMPNVSNLPNVGDRLYDEALYEAAKIIFAFIPDWAKLAVTLTKLQQFQDAVDAARKANSLKTWKDVCFACIDAGESSLAQICGLNVIVQVDDLEEVSKYYQNRGRFNELISLMEKGLELERAHNGIFTELGILYARYHPENLMDHIKLFPTRLNIPKLIRTCDRQHLWKGLTYLYIQCDRFNNAATTVMNHSPEAWDHMQFKFIIVNVSIVELYYMAVHFYLQEHPDMINDLLEVLACRVDHARVVDIMRKAGHIRLIKPYLVAVQSSNVFAVNEALNEIYVEEEDYDRLRESIDLYDNFNEIGLAQKIEKHELLEMRRIAAYIYKKTGRWKQSIALLKKDKLYKDCMETCYLSGDQELSEDLLVYFIEQGKKECFASCLFACYDLIRPDVALELAWTNNMIDFSFPYLIQSIREYTSKVDELIKDKVEAENEKKLREKEREDIIAKQIQPASRISVRIQSKFRLFFQRIGYVVSNIFHRGRSDHFVQHYSIVLHQGCNCGLQCGRSDCSVKKYILRREYKVSNQSFAKQKF | 1366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g02865 | 1366 | SUPERFAMILY | ARM repeat | 684 | 824 | IPR016024 | - | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 300 | 442 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 918 | 1064 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 1067 | 1226 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 151 | 293 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 477 | 616 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 623 | 768 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SMART | CLH_2 | 772 | 913 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Coils | Coil | 1107 | 1127 | - | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 477 | 616 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Gene3D | Tetratricopeptide repeat domain | 682 | 827 | IPR011990 | GO:0005515 | |
| Tsu05g02865 | 1366 | Gene3D | Tetratricopeptide repeat domain | 828 | 1166 | IPR011990 | GO:0005515 | |
| Tsu05g02865 | 1366 | Coils | Coil | 1247 | 1281 | - | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 151 | 297 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 15 | 473 | - | - | |
| Tsu05g02865 | 1366 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 495 | 1288 | - | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 918 | 1064 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | PIRSF | CHC | 12 | 481 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Tsu05g02865 | 1366 | PIRSF | CHC | 491 | 1310 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Tsu05g02865 | 1366 | SUPERFAMILY | ARM repeat | 827 | 1161 | IPR016024 | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 623 | 768 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | SUPERFAMILY | ARM repeat | 531 | 690 | IPR016024 | - | |
| Tsu05g02865 | 1366 | SUPERFAMILY | ARM repeat | 59 | 393 | IPR016024 | - | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 918 | 1061 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 1073 | 1209 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 776 | 910 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 494 | 605 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 301 | 440 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 157 | 289 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Pfam | Region in Clathrin and VPS | 623 | 760 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | PANTHER | CLATHRIN HEAVY CHAIN | 15 | 473 | - | - | |
| Tsu05g02865 | 1366 | PANTHER | CLATHRIN HEAVY CHAIN | 495 | 1288 | - | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 772 | 913 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | Gene3D | - | 1172 | 1268 | - | - | |
| Tsu05g02865 | 1366 | Gene3D | - | 11 | 107 | IPR012331 | - | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 300 | 442 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g02865 | 1366 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1067 | 1210 | IPR000547 | GO:0006886|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g02865 | Tsu-Chr5 | 38919396 | 38933927 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu05g02865 | 05 | 38919396 | 38933927 | Tsu05g02865 | 05 | 38919396 | 38933927 | ECH | |
| Tsu05g02865 | 05 | 38919396 | 38933927 | Tsu03g00874 | 03 | 8017485 | 8028401 | ECH |