Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02018 ATGGTGAAGATTTGTTGCATTGGAGCTGGCTATGTTGGTGGTCCAACAATGGCTGTGATTGCTTTGAAGTGTCCTGAGATTGAGGTAGCTGTGGTGGATATCGCTGCGCCGAGAATCAATGCTTGGAACAGTGATCACCTACCTATATATGAGCCTGGTCTTGAAGATGTGGTAAAGACGTGCAGAGGAAAGAACCTTTTCTTCAGCACTGATGTTGAGAAACATGTTGCTGAGGCTGATATCGTCTTTGTTTCGGTTAACACTCCTACAAAGACGCAAGGTCTTGGAGCTGGTAAAGCAGCTGATCTCACTTACTGGGAGAGTGCTGCAAGGATGATTGCTGATGTTTCAAAATCGGATAAGATTGTTGTTGAGAAGTCGACTGTTCCGGTTAAAACAGCTGAGGCAATCGAGAGGATTTTGACTCACAACAGGAAAGGCATTAATTTCACTATTTTGTCTAACCCTGAGTTTCTTGCTGAGGGTACAGCTATCAAAGACCTGTTCAATCCCGACCGTGTCCTTATCGGAGGCAGGGAAACCCCAGAAGGGCAAAAGGCTATTCATGCTTTGAGAGATGTTTATGCTCATTGGGTCCCGTTGGATCGAATCCTTTGCACTAATCTATGGTCTGCTGAACTCTCAAAGCTTGCAGCCAATGCTTTCTTGGCTCAGAGGATCTCATCTGTGAACGCCATGTCTGCGTTATGTGAGGCAACCGGTGCTGATGTCTCCCAAGTTTCCCACTCAATCGGGACTGACTCAAGAATTGGACCAAAATTCTTGAATGCTAGTGTTGGTTTTGGTGGATCCTGCTTTCAGAAGGATATTCTGAACTTGGTCTATATCTGCGAGTGCAATGGTCTTCCCGAGGTGGCTAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAATCTCGGTTCGTTAACCGAGTTGTTTCTTCAATGTTCAACACAGTCTCAGGGAAGAAGATTGCTGTTTTGGGATTTGCTTTCAAGAAGGACACCGGTGACACTAGGGAGACTCCTGCGATCGATGTGTGCAAGGGTTTATTGGGAGACAAGGCTAAGTTGAGCATATATGATCCTCAAGTTTCTGAAGAGCAAATCTTAAAGGATTTGGCAATGAAGAAATTTGATTGGGATCATCCTGCCCATCTTCAACCAACAAGCCCAACAACTTCCAACAAGCAAGTGTCTGTGGTTTGGGACGCATATGAGGCGATTAAGGATGCACATGGTGTGTGCATTATGACCGAGTGGGACGAGTTCAAGAACCTTGATTACAAAAAAGTTTTCGACAACATGCAGAAACCTGCATTTATCTTTGATGGAAGAAATGTTGTGGATGTGAAAAAGCTGAGGGAAATTGGTTTCATTGTTTATTCCATTGGAAAACCACTAGATGCTTGGCTCAAGGACATGCCTGCAGTGgcttaa 1446 0.4447 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDIAAPRINAWNSDHLPIYEPGLEDVVKTCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNRKGINFTILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIHALRDVYAHWVPLDRILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHSIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVSEEQILKDLAMKKFDWDHPAHLQPTSPTTSNKQVSVVWDAYEAIKDAHGVCIMTEWDEFKNLDYKKVFDNMQKPAFIFDGRNVVDVKKLREIGFIVYSIGKPLDAWLKDMPAVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02018 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Tsu05g02018 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 464 IPR036220 -
Tsu05g02018 481 SMART UDPG_MGDP_dh_C_a_2_a 328 453 IPR014027 GO:0016616|GO:0051287
Tsu05g02018 481 Gene3D - 209 240 - -
Tsu05g02018 481 Gene3D - 241 479 - -
Tsu05g02018 481 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 1 481 - -
Tsu05g02018 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 481 IPR028356 GO:0003979
Tsu05g02018 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 200 IPR036291 -
Tsu05g02018 481 Gene3D - 1 208 - -
Tsu05g02018 481 PIRSF UDPglc_GDPman_dh 2 468 IPR017476 GO:0016616
Tsu05g02018 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 452 IPR014027 GO:0016616|GO:0051287
Tsu05g02018 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Tsu05g02018 481 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Tsu05g02018 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Tsu05g02018 481 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 449 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02018 Tsu-Chr5 23487011 23489585 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02018 05 23487011 23489585 Tsu05g02018 05 23487011 23489585 ECH
Tsu05g02018 05 23487011 23489585 Tsu04g00217 04 1971158 1973932 ECH
Tsu02g03147 02 35100274 35103459 Tsu05g02018 05 23487011 23489585 PCT