Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02017 ATGGAAGAGAAGAAGTTTGTTTGTAAGTATTGTAGCAAAAGGTACCCTTGTGGAAAATCTCTAGGTGGTCATATTAGGACTCATATGATGAGTGAAAATTCACTTCAagctaaagaagaaaaaagaatcaatGCTAATGCTAATGTTAATGCTATGTTTAAGTTTGATgatggaagaaagagaaagagatttGATTTAGGGTCTAGTGGTGGTGGTagcggtggtggtggtggtgctggTGCTGATGATGGAAACCTTATTTATGGTCTTAGAGAGAATCCCAAGAAAACATCAAGGTTTGTGCACTCCAATGTTGCTACTGTTCAAATGGAGAAATTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTTTGTGTGGTCACATGGCTTGTCACTCTGAGAAAGACAAAGGAACCAATCGGATTGAAAGTGTGTCTGGTGTCGGTGATAAGCAGAAATTGGTTATGGATAGTCAATCGGATACCGAGGCTTCGGTTCCAACTGATACACGGAGATCTAAGAGAATGAAGTTCAAGAATCTTAACGGCGGTGACAATAGTCATCCACCTTCTTCCTCTTCGCTTCATTGGGGAAATTGTTCTTCTTCGGTTTCCGAGGTTGAGCAGGAGCAAGAAGATGTTGCTAGGTGTTTGATGATGTTGTCTAAAGATGCTACTTACAAGGGTCGTTTTGCTATGGTGACAGAGTCTTCTGATAACAACTCAGTTGTTCTCGAAGCAAAATCGAAATCACCTTCTGTTGATACCAAATTTGCTGCTATCAAGAACATTGTTGGTACTAAAAACAATGCTTGTGAGTTCGCGGAGAGGAAGCTGAACAAAGATACCAAGATGAAATCGGTCGAAATTGGTTATGTTTCTGATAATTCTGATTCTGGGTATTTCACATATGGTCCTAGAAAAGTTGAATCAGATGATTCAAGTGACGCGTTTTTCATGAATGATGTTAAGTCTTCTAAAGCTGGACTCATCTCTGGATTTGAAGATCATGATTTTGATTCAAGGAAGAAGATAATGAGCAGAGAAAAAAGAAGCAGAAACAGTAATGAATTCAAGAAACTAGCTTTGGATGATTCAAGGAAGAGGCAAAATTTAGTTGAAGGTTCTAgcaagaaaaaagcaaaaaatggTTCTTATAACAATGATGAAAACTATGAGagtttgaaaattgaaagagaGAGTTATTCTGAAGATTCAGCTTATGAAAGTGATGAAAACACCACTGATAGTGATTCATATCCTGCTCCACCAAAGACACAAAGCAATAGGAACATAAATGCAAAGACTAAGAAGTTAACAAgcaaaggaaagaagaaaatgaagtcAAAGAAAAGCAAAGAACATGAATGTCCAATTTGCAACAAGATTTTTAGGTCAGGACAAGCATTAGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGGAATGATGAAAACACTTTTGTGATTAGACCAGCTAATGGTGGTGCTGTTCAAGCTGCTCCTGCTGCTAATCCTTGCTTAATTGATCTTAATCTACCTGCTCCTGATGATGAATAA 1563 0.3493 MEEKKFVCKYCSKRYPCGKSLGGHIRTHMMSENSLQAKEEKRINANANVNAMFKFDDGRKRKRFDLGSSGGGSGGGGGAGADDGNLIYGLRENPKKTSRFVHSNVATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGTNRIESVSGVGDKQKLVMDSQSDTEASVPTDTRRSKRMKFKNLNGGDNSHPPSSSSLHWGNCSSSVSEVEQEQEDVARCLMMLSKDATYKGRFAMVTESSDNNSVVLEAKSKSPSVDTKFAAIKNIVGTKNNACEFAERKLNKDTKMKSVEIGYVSDNSDSGYFTYGPRKVESDDSSDAFFMNDVKSSKAGLISGFEDHDFDSRKKIMSREKRSRNSNEFKKLALDDSRKRQNLVEGSSKKKAKNGSYNNDENYESLKIERESYSEDSAYESDENTTDSDSYPAPPKTQSNRNINAKTKKLTSKGKKKMKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGNDENTFVIRPANGGAVQAAPAANPCLIDLNLPAPDDE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02017 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 457 479 IPR013087 -
Tsu05g02017 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 520 - -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 169 183 - -
Tsu05g02017 520 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 379 393 - -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 439 453 - -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 157 201 - -
Tsu05g02017 520 Pfam C2H2-type zinc finger 6 29 - -
Tsu05g02017 520 Pfam C2H2-type zinc finger 457 479 - -
Tsu05g02017 520 Pfam C2H2-type zinc finger 114 136 - -
Tsu05g02017 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 394 408 - -
Tsu05g02017 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Tsu05g02017 520 SMART c2h2final6 6 28 IPR013087 -
Tsu05g02017 520 SMART c2h2final6 112 134 IPR013087 -
Tsu05g02017 520 SMART c2h2final6 457 479 IPR013087 -
Tsu05g02017 520 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 415 438 - -
Tsu05g02017 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 520 - -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 347 378 - -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 186 201 - -
Tsu05g02017 520 SUPERFAMILY beta-beta-alpha zinc fingers 113 479 IPR036236 -
Tsu05g02017 520 ProSitePatterns Zinc finger C2H2 type domain signature. 459 479 IPR013087 -
Tsu05g02017 520 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Tsu05g02017 520 MobiDBLite consensus disorder prediction 347 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02017 Tsu-Chr5 23471805 23473367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g02017 zf-C2H2_6 9.9e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02017 05 23471805 23473367 Tsu05g02017 05 23471805 23473367 ECH