Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g01999 | atggAAATAGACAGTGAAAACATCAAAGAGAAGGATCTGTTCAAAGCAGCTGAAGAAGGAGATTCTTCAATTTTCGAATCATTATCCCCTCAATCACTCTCCAAATCACTCTCTCTAACAAACGAAGACGCTCGCTCACTTCTTCATGTTGCCACTTCTTCTGGTCACTCTAAGGTTGTGAAGATATTATTGTCTTGTGATGCATCTGCTGAGGTGATAAATAGTGCTGATGAAGAAGGGTGGGCACCGCTTCATTCTGCTGCAAGTATTGGGAATTTGGAGATATTGGAGGCTTTGTTAAACAAagGAGCTGatgttaatataaaaaacaatggGGGACGCACTGCCTTACACTATGCAGCCAGCAAAGGCCGGATGAAGATTGCTGAAAAACTCATCTCTCATAATGCCAATATCAATATAAAGGACAAGGTTGGTTGCACCCCACTGCATCGGGCAGCTAGCACTGGGAATTCTGAGCTGtgtgaattttttattgaagaaggAGCAGATGTTGATGCCGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCCGTGATTTGTTATAACAAAGTGGTAGCACTTCTTCTTATAAGGCATGGAGCAGATGTGGATGTAGAGGACAAGGAAGGGTACACAGTGCTTGGTCGAGTTACCGATGATGGATTTAGAACAATATTGATTGATGCTGCCAAGACCATGCTTGAGTGA | 714 | 0.4062 | MEIDSENIKEKDLFKAAEEGDSSIFESLSPQSLSKSLSLTNEDARSLLHVATSSGHSKVVKILLSCDASAEVINSADEEGWAPLHSAASIGNLEILEALLNKGADVNIKNNGGRTALHYAASKGRMKIAEKLISHNANINIKDKVGCTPLHRAASTGNSELCEFFIEEGADVDAVDRAGQTPLMNAVICYNKVVALLLIRHGADVDVEDKEGYTVLGRVTDDGFRTILIDAAKTMLE | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g01999 | 237 | PANTHER | MYOTROPHIN | 40 | 153 | - | - | |
| Tsu05g01999 | 237 | PANTHER | MYOTROPHIN | 70 | 220 | - | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 43 | 74 | - | - | |
| Tsu05g01999 | 237 | PANTHER | MYOTROPHIN | 70 | 220 | - | - | |
| Tsu05g01999 | 237 | PANTHER | MYOTROPHIN | 40 | 153 | - | - | |
| Tsu05g01999 | 237 | SMART | ANK_2a | 178 | 207 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | SMART | ANK_2a | 112 | 141 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | SMART | ANK_2a | 145 | 174 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | SMART | ANK_2a | 43 | 72 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | SMART | ANK_2a | 79 | 108 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | PRINTS | Ankyrin repeat signature | 113 | 128 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | PRINTS | Ankyrin repeat signature | 194 | 208 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 112 | 144 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | SUPERFAMILY | Ankyrin repeat | 13 | 220 | IPR036770 | - | |
| Tsu05g01999 | 237 | Pfam | Ankyrin repeats (many copies) | 113 | 166 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | Gene3D | - | 4 | 117 | IPR036770 | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 79 | 111 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | Pfam | Ankyrin repeat | 179 | 209 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | Gene3D | - | 118 | 235 | IPR036770 | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 112 | 144 | - | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 178 | 210 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 145 | 177 | - | - | |
| Tsu05g01999 | 237 | Pfam | Ankyrin repeats (3 copies) | 13 | 110 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 43 | 75 | IPR002110 | GO:0005515 | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 79 | 111 | - | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 178 | 210 | - | - | |
| Tsu05g01999 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 145 | 177 | IPR002110 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu05g01999 | 05 | 23080554 | 23086084 | Tsu05g01999 | 05 | 23080554 | 23086084 | ECH |