Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01987 atgacAACACTTTACATGCCATTGTTCAGATCATGTTCAACCTTAAAACAACTCACTCAACTCCATGCTCACCTTGTAGTTACCAACCTCCACAATGACCCACTTGCATCCACAAAGCTTCTTGAATCCTATTCCCAAATGGGTTCTCTTCGATCATCAAGACTCGTTTTTTATTCATACCCATTTCCTGATTCCTTCATGTTTGGTGTTCTAATCAAATGTTACCTTTGGAATAACCTTTTTGACCAAGTGCTTTCTCTTTACAATCATCACATTTATAAGGGTTCAAAATTCACTCAAAATTGTAGTTTTTTGTATCCTTCTGTTATAAGAGCTGTTTCTGGTGTTGGTGATTTGGTTGTTGGGAGAAAATTACATGGAAGGATTGTTAAATCTGGGTTTAGTGAGGATCGTGTTATTGGGACTTCGTTGCTTGGAATGTATGGGGAATTATGTTGTTTAAGTGATGCTAAGaaggtgtttgatgaaatgtgTGTTAGAGATTTGGTTTCTTGGAGTTCAATTTTTTCGTGTTATGTTGAGAATGGGATTTATAGAGAAGGATTGGAAATGTTTCGTTCGATGGTTTCTGAGGGAATTAGACCTGACTCGGTTACGTTGCTTAGTGTAGCCGAGGCTTGTGGTAAAACCGGTTGCTTTAGGTTAGCGAAATCGGTTCATGGATATGTGATCAGAGAAGGCATGATTGGTGATGGTAGTTTGAGTAATTCTCTTATTGTTATGTATAGTCAGTGTGGTTACTTGTGTAGAGCGAACCGCCTCTTTGAATATCTTGATAATCGGAGTACTTCTTGTTGGACTTCTATGATTTCATCCTATAATCAAAATGAGTGTTTTAAAGAGGCAATGGATGTTTTTATTAAGATGCAAGATTCAGAGGTAGAACCGAATGAAGTGACAATGATTAGTGTTCTGAATTCCTGCGCTAGATTAGGTCGGTTAAAAGAGGGAAAATCAGTTCATTGCTTTGTTTTAAGGAAAGCAATGGATGCTGCTGATCTTGATCTTGGGCCTGCACTAATAGATTTCTATGCAGCGTGCTGGAAAATAAGTAGTTGTGAAAAACTTGTACATTTAATCGGAAACAAAAATGTTGTATCGTGGAATACGCTCATTTCATTTTATGCTCGGGAAGGTTTAAACAGAGAAGCGATGATACTCTTTGCGAAAATGGTGGTGAAGGGTTTAATGCCAGACTCATTTAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTGCTGGTTCAATGCACTTTGGACAGCAGATACATGGTCATGCCATGAAAAGAGGCTTCGTCGATGAATTTGTTCAGAACTCTTTGATGGACATGTATTCAAAATGTGGCTTTCTTGATTTGGCATACACAATTTTTAACAGGATCAGGAAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGGTTTTCTCAGAACGGCCTTTCATTAGAAGCACTCAACCTCTTTGATGAGATGTACGAAAATTGTCTTGAGTTTAATGAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTCGACAAAGGAAAATGGATTCACCATAAGGTCATTGTAACCAGTAATCAGAACGATCTTTTTATCGATACAGCTTTGGTAGATATGTATGCCAAATGCGGAGACCTTGAAACATCCCGAAGAGTTTTTGATAGCATGCTCGAGAAAAGTGTAGTGTCATGGAGTACCATGATTGCTGCTCATGGCATACACGGTCAAATAAATGCTGCAATCTCACTCTTCATTAAAATGGTTCACTCAAATATCAAACCAAATGAAATAACCTTCATGAATATCTTATCCGCCTGTAGGCACGCTGGATCCGTCGAGGAAGGTAAACTTTATTTCAACTCTATGAGGGAATATGGCATAGTGCCCAATACCGAACACTTTGCCTCCATAGTTGACCTTCTAAGCCGTTCCGGGGATATCAACGGAGcgtatgaaataattaaatcaatACGCCCACCCGTAGATGCTAGCATATGGGGAGCTTTACTAAACGGGTGTCGAATACACAGGAGGATGGACATGATTGAGAACATCGGTGAAGAACTCGGACaaataaacacaaatgataCAGGTTACTATACTTTGTTATCTAACATATATGCTGAAGGAGGAAAGTGGTATGAATCAAGAAAGGTAAGATCGAGGATGGAAGGAATGGGACTCAAGAAAGTACCTGGTTATAGTACCATTGAAATAGATAGGAAAATCTATAGATTTGGAGCCGGAGATACTTCTGAATGGCAAATGAAAGAAATTTGGATGtttttagaaaattttcaaaGCTTGGCACAGGAACAAGGATGTGATTTAGAAAGCTATATGTATAATAATACTAGAagtggtgtttttttttatgattttagtgTTTATAACTTGCAGAGAGAAGCAAGTAATTGCATTGAGAATAAATCATTCCTACTTTAG 2481 0.3696 MTTLYMPLFRSCSTLKQLTQLHAHLVVTNLHNDPLASTKLLESYSQMGSLRSSRLVFYSYPFPDSFMFGVLIKCYLWNNLFDQVLSLYNHHIYKGSKFTQNCSFLYPSVIRAVSGVGDLVVGRKLHGRIVKSGFSEDRVIGTSLLGMYGELCCLSDAKKVFDEMCVRDLVSWSSIFSCYVENGIYREGLEMFRSMVSEGIRPDSVTLLSVAEACGKTGCFRLAKSVHGYVIREGMIGDGSLSNSLIVMYSQCGYLCRANRLFEYLDNRSTSCWTSMISSYNQNECFKEAMDVFIKMQDSEVEPNEVTMISVLNSCARLGRLKEGKSVHCFVLRKAMDAADLDLGPALIDFYAACWKISSCEKLVHLIGNKNVVSWNTLISFYAREGLNREAMILFAKMVVKGLMPDSFSLASSISASASAGSMHFGQQIHGHAMKRGFVDEFVQNSLMDMYSKCGFLDLAYTIFNRIRKKSIVTWNCMICGFSQNGLSLEALNLFDEMYENCLEFNEVTFLSAIQACSNLGYLDKGKWIHHKVIVTSNQNDLFIDTALVDMYAKCGDLETSRRVFDSMLEKSVVSWSTMIAAHGIHGQINAAISLFIKMVHSNIKPNEITFMNILSACRHAGSVEEGKLYFNSMREYGIVPNTEHFASIVDLLSRSGDINGAYEIIKSIRPPVDASIWGALLNGCRIHRRMDMIENIGEELGQINTNDTGYYTLLSNIYAEGGKWYESRKVRSRMEGMGLKKVPGYSTIEIDRKIYRFGAGDTSEWQMKEIWMFLENFQSLAQEQGCDLESYMYNNTRSGVFFYDFSVYNLQREASNCIENKSFLL 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Tsu05g01987 826 Pfam PPR repeat 170 200 IPR002885 -
Tsu05g01987 826 Pfam PPR repeat 142 167 IPR002885 -
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 610 643 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 546 574 IPR002885 -
Tsu05g01987 826 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Tsu05g01987 826 Pfam E motif 699 750 IPR046848 -
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Tsu05g01987 826 Gene3D Tetratricopeptide repeat domain 341 428 IPR011990 GO:0005515
Tsu05g01987 826 Gene3D Tetratricopeptide repeat domain 80 228 IPR011990 GO:0005515
Tsu05g01987 826 Gene3D Tetratricopeptide repeat domain 544 755 IPR011990 GO:0005515
Tsu05g01987 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 401 777 - -
Tsu05g01987 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 275 - -
Tsu05g01987 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 273 405 - -
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Tsu05g01987 826 Gene3D Tetratricopeptide repeat domain 230 340 IPR011990 GO:0005515
Tsu05g01987 826 Pfam PPR repeat family 571 618 IPR002885 -
Tsu05g01987 826 Pfam PPR repeat family 470 518 IPR002885 -
Tsu05g01987 826 Pfam PPR repeat family 269 317 IPR002885 -
Tsu05g01987 826 Pfam PPR repeat family 370 409 IPR002885 -
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Tsu05g01987 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Tsu05g01987 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 275 - -
Tsu05g01987 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 273 405 - -
Tsu05g01987 826 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 401 777 - -
Tsu05g01987 826 Gene3D Tetratricopeptide repeat domain 429 533 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01987 Tsu-Chr5 22967568 22970048 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01987 05 22967568 22970048 Tsu05g01987 05 22967568 22970048 ECH