Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g01891 | ATGATGATTAATGATTCATCCATAAAGATTTTTGGGAGAACCATTTTTTTAACACATAACATCGATGTCTCTTCCAATGATTCTTCCTCGGAATTTGCTTCTCATCTTCCTCATGAAGATTTATCTGATCATAGTCTTCACTCATCTTTATCATCATCTTCTCCATTTGAAGTGAATTCTCCAACAGAACATGCTGCAAAGAGATATAAGGAAACATCAAGGAAAGAACTATCCTCAATGCAAAATGATGAGGCTTCATTCCAAACTACAGAGGATTCAAAATCTTCCACATCCTCAAGCCTTGTTGAGAACCCGAAAACTCCCTTATCTGAAACAAAAACTTCTGAACTGAATTCCACTAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAACAAACCAGACTTAATTGTTCCATGTCCAAGATGTAAAAGCATGGACACAAAATTTTGTTACTACAACATCAAACAGCCCCGACACTTCTGCAAAAACTGTCGGAGATACTGGACTGCAGGAGGAACCGCGAGAAGTATGCTTATAGGCGCAGGCCGTCGCAAGAACAAAATCTCTTTTCCTTCCGATGTCTCGCATAATCCTCAAATGAGTACTGTCTTGGCCTTTGGATCTTATTCacttgagaagaaaatgaatgttggatcacatgaaGGAACGTCTGATAAGAGTTCTCAAAGTGTTTTTCCTCCACATTTTCCATGGAACCCTACAATGTTTTATCCTATGACATTCTATCCCAATGTAGCATACTATGGTGGTTGTTTGCCACCATCTTGGAGTGTGCAATCTATCTCACCACAATCTTGTGGTCCAAGTAATCCTACTTTAGGGAAACATTCAAGAGATGGAAAGATTATCTTTCATTCCAActcaaagaaagaaaagctTTGCTCAGAAAATAACAAGATagaaagtaataataatagtatgatGATCCCTAAGACACTAAGAGTAGGACTTTTCAAAGGATTTGCATCTAAGGGTGATGAGAAGAGTTATGTGGTTGAAGCATCCTCATAA | 1044 | 0.3563 | MMINDSSIKIFGRTIFLTHNIDVSSNDSSSEFASHLPHEDLSDHSLHSSLSSSSPFEVNSPTEHAAKRYKETSRKELSSMQNDEASFQTTEDSKSSTSSSLVENPKTPLSETKTSELNSTKIDEQSDMSQDKSPNKPDLIVPCPRCKSMDTKFCYYNIKQPRHFCKNCRRYWTAGGTARSMLIGAGRRKNKISFPSDVSHNPQMSTVLAFGSYSLEKKMNVGSHEGTSDKSSQSVFPPHFPWNPTMFYPMTFYPNVAYYGGCLPPSWSVQSISPQSCGPSNPTLGKHSRDGKIIFHSNSKKEKLCSENNKIESNNNSMMIPKTLRVGLFKGFASKGDEKSYVVEASS | 347 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g01891 | 347 | MobiDBLite | consensus disorder prediction | 117 | 131 | - | - | |
Tsu05g01891 | 347 | MobiDBLite | consensus disorder prediction | 26 | 138 | - | - | |
Tsu05g01891 | 347 | PANTHER | CYCLIC DOF FACTOR 2 | 3 | 196 | IPR045174 | GO:0003700|GO:0006355 | |
Tsu05g01891 | 347 | PANTHER | CYCLIC DOF FACTOR 2 | 211 | 326 | IPR045174 | GO:0003700|GO:0006355 | |
Tsu05g01891 | 347 | MobiDBLite | consensus disorder prediction | 79 | 116 | - | - | |
Tsu05g01891 | 347 | Pfam | Dof domain, zinc finger | 141 | 191 | IPR003851 | GO:0003677|GO:0006355 | |
Tsu05g01891 | 347 | ProSiteProfiles | Zinc finger Dof-type profile. | 141 | 192 | IPR003851 | GO:0003677|GO:0006355 | |
Tsu05g01891 | 347 | PANTHER | DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN | 211 | 326 | - | - | |
Tsu05g01891 | 347 | PANTHER | DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN | 3 | 196 | - | - | |
Tsu05g01891 | 347 | MobiDBLite | consensus disorder prediction | 63 | 78 | - | - | |
Tsu05g01891 | 347 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g01891 | Tsu-Chr5 | 20796249 | 20797690 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g01891 | 3 | 326 | C2C2-Dof Transcription Factor Family | AT5G39660 | 31.605 | 6.48e-40 | 144 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Tsu05g01891 | zf-Dof | 4.5e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g01891 | - | - | mtr:MTR_5g041530 | 414.846 |