Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01890 ATGATGATTAATGATTCATCCATGAAGCTTTTTGGGAGAACCATTTTTGTAACACACAACCACATCGATGTCTCTACCAATGATTTTTTCTCGGAACATGTTGCAAAGAGATATATGGAAACATCAAGGAAAGAACTAACTTCAATGCAAGATGATGAGGCTTCATTCAAAACTACAGAGGATTCAAAATCTTGCACATCTTCAAGCCTTGTCGAGAACCCGAAAACTCCCTCATCTGACACAGAAGCTTCCGAACTGAGTTCCATTAAAATTGATGAACAAAGTGATATGTCACAAGATAAATCTCCAAAGAAACCAAACTTAATTGTTCCATGTCCAAGATGTAAAAGCATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCCCGACACTTCTGCAAAAACTGCCAGAGATACTGGACTGCAGGAGGAACCACGAGAAGTATGCTTATAGGTGCAGGCCGTCGCAAGAACAAAATCGCTTTTCCTACCGATGCCTCGCATAATCGTCAAACGAGTACTGTCATGACCTTTGGATCAGATTCTCCTATTATGTCTTCacttgagaagaaaatgaatgtTGACTCACATGaagaaaaaactaataatagttATCAAAGTTTTCCTCCACAATTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTATATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGCACAATCTATCTCACCACAATCTTGTGGTCCAATCTTGTGA 774 0.3773 MMINDSSMKLFGRTIFVTHNHIDVSTNDFFSEHVAKRYMETSRKELTSMQDDEASFKTTEDSKSCTSSSLVENPKTPSSDTEASELSSIKIDEQSDMSQDKSPKKPNLIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRSMLIGAGRRKNKIAFPTDASHNRQTSTVMTFGSDSPIMSSLEKKMNVDSHEEKTNNSYQSFPPQFPWNPAMSYPVTLYPNIAYYGGCLVPSWSAQSISPQSCGPIL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01890 257 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Tsu05g01890 257 MobiDBLite consensus disorder prediction 45 59 - -
Tsu05g01890 257 Pfam Dof domain, zinc finger 110 163 IPR003851 GO:0003677|GO:0006355
Tsu05g01890 257 MobiDBLite consensus disorder prediction 45 108 - -
Tsu05g01890 257 MobiDBLite consensus disorder prediction 60 85 - -
Tsu05g01890 257 MobiDBLite consensus disorder prediction 86 100 - -
Tsu05g01890 257 PANTHER CYCLIC DOF FACTOR 2 3 203 IPR045174 GO:0003700|GO:0006355
Tsu05g01890 257 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 3 203 - -
Tsu05g01890 257 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01890 Tsu-Chr5 20790534 20791784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01890 3 244 C2C2-Dof Transcription Factor Family AT1G26790 35.206 4.11e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu05g01890 zf-Dof 7.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01890 - - mtr:MTR_5g041420 366.696