Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01889 ATGATGATTAATGATTCATCCATGAAGCTTTTTGGGAGAACCATATTTGTAACACACAACAACATCGATGTCTCTACCAATGATTCTTCCTCAGAATTTGCTTCTCATCTTCCTCATGAAGATTTATCTGATCATAGTCTTCATTCATctttatcttcatcttctccactTGAAGTGAATTCTCAAACTCAACATGATGCTAAGAGATATAAGgaaacagaaacaaaaaaactcaCCTCAgtggaagatgatgatgaggtCTCACAACAAACCACAGAGGAATTAAAATCTATCACATCTTCAAGCCTTGTTGAGAATCCGAAAACACCCTCATCAGAAACCGAAACTTCTCAACTCAATTCCACTAAACATGATGAACAAAGTGATATGTCACAAGACAAATCTCTAAAGAAACCAGACCAAATTGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCTCGACATTTCTGCAAAAACTGTCAGAGATATTGGACTGCTGGAGGAACCACGAGAAATATGCTTGTAGGCGCAGGTCGACGCAAGAACAAATtatcttcatctttttcttccaATGTCTCGCATGATCGTCAAACGAGTACTGTCTTGACCTTTGGATCAGATTCTTCAACTTCacttgagaagaaaatgaatgtTGACTCacatgaagaaaaaattgataatagTTATCAAAGTTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGTGCAACCTATCTCACCACAATCTTGTGTTCCAACTCTAGCGAAACATTCGAGAGATGGAAACATTTTCTCTCATTCCAACTCAGAGAAAGAAAAACTTTGCTCAGAAAATAACAAGATAGAAAGTAATAACAATTGTGTGATCCCTAAGACACTGAGAAGAAAACTATTCAAGGGATTTGCATCTTCTAAGGGTGATGAGAATAATCATGTGGTTGAAGTATCATCATCAGTATTGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTAA 1122 0.3369 MMINDSSMKLFGRTIFVTHNNIDVSTNDSSSEFASHLPHEDLSDHSLHSSLSSSSPLEVNSQTQHDAKRYKETETKKLTSVEDDDEVSQQTTEELKSITSSSLVENPKTPSSETETSQLNSTKHDEQSDMSQDKSLKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSNVSHDRQTSTVLTFGSDSSTSLEKKMNVDSHEEKIDNSYQSFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCVPTLAKHSRDGNIFSHSNSEKEKLCSENNKIESNNNCVIPKTLRRKLFKGFASSKGDENNHVVEVSSSVLKANPAALSRSLVFHERI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01889 373 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Tsu05g01889 373 MobiDBLite consensus disorder prediction 92 118 - -
Tsu05g01889 373 MobiDBLite consensus disorder prediction 47 63 - -
Tsu05g01889 373 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Tsu05g01889 373 MobiDBLite consensus disorder prediction 28 143 - -
Tsu05g01889 373 PANTHER CYCLIC DOF FACTOR 2 3 201 IPR045174 GO:0003700|GO:0006355
Tsu05g01889 373 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 210 330 - -
Tsu05g01889 373 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 3 201 - -
Tsu05g01889 373 Pfam Dof domain, zinc finger 140 196 IPR003851 GO:0003677|GO:0006355
Tsu05g01889 373 PANTHER CYCLIC DOF FACTOR 2 210 330 IPR045174 GO:0003700|GO:0006355
Tsu05g01889 373 MobiDBLite consensus disorder prediction 119 136 - -
Tsu05g01889 373 MobiDBLite consensus disorder prediction 64 84 - -
Tsu05g01889 373 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 332 372 - -
Tsu05g01889 373 PANTHER CYCLIC DOF FACTOR 2 332 372 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01889 Tsu-Chr5 20776737 20778858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01889 110 373 C2C2-Dof Transcription Factor Family AT1G69570 36.875 2.02e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu05g01889 zf-Dof 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01889 - - mtr:MTR_5g041530 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01889 05 20776737 20778858 Tsu05g01889 05 20776737 20778858 ECH
Tsu05g01889 05 20776737 20778858 Tsu03g01621 03 16173113 16176180 ECH
Tsu05g01889 05 20776737 20778858 Tsu04g00160 04 1557722 1560566 ECH
Tsu05g01889 05 20776737 20778858 Tsu06g02119 06 26591846 26595048 ECH