Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01329 atgtcaCCTGATGAAACAAAAACCTCAAAATCTCCAaaagacaacaacaacaatcaacaaggttctggtggtggtggtggtggtggtggtagtgGTGGTGGTAAGAAaacatcttcatcatcttcaacttcaacaacaaaaccACCACATGAACAAAACATGAAGTGTCCAAGATGTGATTCACCAAACACAAAATTCTGCTACTACAACAACTATAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCCATTGGCGGTGGATGtagaaaaaacaagaaaatgaaatcatcatcatcatcaagacTCTCTTGTGGTGATAATTCAAAAGACTCTGCTTCTTCTTCTGAACTTGTTGGTGGTTTAAAATTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTACTGGTTGTTTACCTTTTCCAAGGCTtcaacttcaacaaaatcatcataatctTTCTCCAATGTTTAATCAGTTTTCATCTTTTGGAGAAACTTCTTCTGCTAtgaatcataataataataataattaccctGCTTCTTCAAATTCTGTTGCTGTTTCTGCTATGAATTTTCCATTTTCAGTTGGTGGtggtaataataattataatggTGCAATTCAAGGTATGAGTTCAATGAATATTCATAGTAACGTTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCTATGCTGTTTGGTGGTGGAGAAAATCAGCAGAAAGAAAATAATCAGACAGAGAAACCATTGCAACCTATTTTGTTTCAGAATCTTGAGGTTACAAAGCAGCAAGATGGTGGAAATTTTTCTGTTGGAAATTCAAGAAGAGAAAGTATAAATGGTGGAGATACACCAACTGAGTGGTTTTTTGGTAATTCTTATGGTTCTGTTGCTGCTACACCAACTGCTAGTGGCGGCGGTGGTGGTGGACATGATAGTGGAAGCAACTGGAACGGTGGTGGTGGCGGTGTTCATGGTTGGAGTGATGTGCAGCAGCAATATAGTGCTTTGCCCTAG 1107 0.318 MSPDETKTSKSPKDNNNNQQGSGGGGGGGGSGGGKKTSSSSSTSTTKPPHEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMKSSSSSRLSCGDNSKDSASSSELVGGLKFLHSLSSPSMDFHLGTGCLPFPRLQLQQNHHNLSPMFNQFSSFGETSSAMNHNNNNNYPASSNSVAVSAMNFPFSVGGGNNNYNGAIQGMSSMNIHSNVASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQQKENNQTEKPLQPILFQNLEVTKQQDGGNFSVGNSRRESINGGDTPTEWFFGNSYGSVAATPTASGGGGGGHDSGSNWNGGGGGVHGWSDVQQQYSALP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01329 368 MobiDBLite consensus disorder prediction 1 56 - -
Tsu05g01329 368 MobiDBLite consensus disorder prediction 33 51 - -
Tsu05g01329 368 Pfam Dof domain, zinc finger 52 108 IPR003851 GO:0003677|GO:0006355
Tsu05g01329 368 MobiDBLite consensus disorder prediction 112 128 - -
Tsu05g01329 368 MobiDBLite consensus disorder prediction 99 128 - -
Tsu05g01329 368 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 28 368 - -
Tsu05g01329 368 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 368 IPR045174 GO:0003700|GO:0006355
Tsu05g01329 368 MobiDBLite consensus disorder prediction 330 368 - -
Tsu05g01329 368 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Tsu05g01329 368 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01329 Tsu-Chr5 12107104 12108445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01329 40 368 C2C2-Dof Transcription Factor Family AT5G65590 42.941 6.22e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu05g01329 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01329 - - gmx:100780729 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01329 05 12107104 12108445 Tsu04g03011 04 37196487 37197747 PCT