Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00196 ATGGAATCTATGTATCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCACTTTCACCTAGCATAGGAGGAATAGGATCTCCATATCCATGGCTTAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTAATCCATTTGTTACTCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCATCTCCTGATGGAGATACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGATAGGATACTCAAAACTTGGCCTGGACTTCATAGAGCTTTGAATTCGACGAGAATTATTATGCTTTCGGAAGAAATTATGGTTCAGAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAGGTTGCATATATTTTGACTAATCAAGCTATTGTTGAATCTATGGAAGGCGAGAAAATGGTTCATATTATTGATCTAAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCTCGGCCCGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAACAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTTTCGGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAGCTAGAGAATCTCGATTTCGACAAACTTCGTGTAAAAACTGGCGAGGCGCTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCTTTGGATGATGAATCATCATCTTCAAGGAGAAAAACCCCTCTTTTGTCAAGAAACTCAAATGGACTTCACCTACAAAAGGTCATGCTTATGAACCAAAGCTCGTCATTAGGTGATTTACTTGAAAAAGATATGGTTAATGGATATACTCCAAGTCCCGATTCAACATCCTCGTCGTCACCAGCATCTTCAAATGCTTCATTAAATGTGGAGAGCTTTCTCAATGCCTTGTGGAGTTTGTCGCCGAAAGTCATGGTTGTAACCGAACAAGACTCTAATCACAACGGTTCGACTCTAATGGAGAGGCTACTTGAAGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCAACTGTGTCAAGAACATCACTAGAaagatttaagattgagaagaTGCTGTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAAGGAgctgaaagaaaagaaagacatGAAAAACTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGGAGGTTTCTGCAGAGTTATGGTTGTGAGGGATACAAAATGAGAGAAGAAAATGGTTGTGTAGCAATTTGCTGGCAAGATCGGTCATTGTTTTCGACAACAGCTTGGAGAGCTAGGAAGTGA 1449 0.381 MESMYQEEGSSSVTCSPLQLFSMMSLSPSIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEIMVQKYFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTPLLSRNSNGLHLQKVMLMNQSSSLGDLLEKDMVNGYTPSPDSTSSSSPASSNASLNVESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWRARK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00196 482 MobiDBLite consensus disorder prediction 308 322 - -
Tsu05g00196 482 PANTHER BNAA06G02820D PROTEIN 329 381 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tsu05g00196 482 ProSiteProfiles GRAS family profile. 44 479 IPR005202 -
Tsu05g00196 482 PANTHER BNAA06G02820D PROTEIN 386 481 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tsu05g00196 482 PANTHER BNAA06G02820D PROTEIN 3 269 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tsu05g00196 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 386 481 IPR005202 -
Tsu05g00196 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 329 381 IPR005202 -
Tsu05g00196 482 MobiDBLite consensus disorder prediction 303 322 - -
Tsu05g00196 482 Pfam GRAS domain family 53 479 IPR005202 -
Tsu05g00196 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 269 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00196 Tsu-Chr5 1430712 1433073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00196 1 482 GRAS Transcription Factor Family AT1G50420 67.076 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu05g00196 GRAS 2.4e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00196 - - tcc:18589932 734.176