Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03781 ATGCAGGAAATACATTCCATCGGAGGCGGCGGAACCAGATTCTTCGGCGGCGGTGGAAGCGGTGATCGGAGACTTAGaccaaaccaaaacaacaacaacagccaAAGCCAACCAGTCTTGAAATGTCCTCGCTGTGAATCCATCAACACAAAATTCTGCTACTATAACAACTATAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGCCGTAAATCTAAACGCTCAACCAAACCTAAAAACACTTCCTCCTCATCGGAAATCTCTCCTTTACCGATGACTCCACCGGAGAACAAATCAAACTCTCACTCAAGCAGTGAGAGTTCTAGCCTCACCGCCGCTGCGGTGACCGAGACTGTTTCAGAACAAAAACCGCTAAACTCTAACACGAAAATCAACACTGGTTTGGAGAATGATTCACTAGGTGATTGCGGTATTTTCTCAGAGATCGCGAATTTTACAAGCTTGATCACTTCTTCCTCTAACGAGACATTGCCGTTTGGATTCGGTAACTGTAACGGCAACAGTAACGGTAACGGTAACTGTCTGACCGATGCGTCGTCTTTTCAGTGGCAAAACCAAAAAGTGATGGATCAACAGAATCATCATCATGAAGATGCATCATTGAAGTTGTTACCGGAGAATATTGGTTCTGGATCGTTGATGGACCACAGTATTGATTTCTCTTTGCTGCAGAGTAAAACTACCAACGGTGGATTTGGATCGTTGGATTGGCAAGGTGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGGTTACTGGAATCATACACACTGGACTGATCAGGATAATGACAATTCTACCCTCTTTCATCTTCCTTGA 912 0.4419 MQEIHSIGGGGTRFFGGGGSGDRRLRPNQNNNNSQSQPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSTKPKNTSSSSEISPLPMTPPENKSNSHSSSESSSLTAAAVTETVSEQKPLNSNTKINTGLENDSLGDCGIFSEIANFTSLITSSSNETLPFGFGNCNGNSNGNGNCLTDASSFQWQNQKVMDQQNHHHEDASLKLLPENIGSGSLMDHSIDFSLLQSKTTNGGFGSLDWQGGADQGLFDLPNTVDQGYWNHTHWTDQDNDNSTLFHLP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03781 303 MobiDBLite consensus disorder prediction 24 39 - -
Tsu04g03781 303 MobiDBLite consensus disorder prediction 98 152 - -
Tsu04g03781 303 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Tsu04g03781 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 293 IPR045174 GO:0003700|GO:0006355
Tsu04g03781 303 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 8 293 - -
Tsu04g03781 303 MobiDBLite consensus disorder prediction 85 152 - -
Tsu04g03781 303 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Tsu04g03781 303 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Tsu04g03781 303 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03781 Tsu-Chr4 46717966 46719803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03781 22 303 C2C2-Dof Transcription Factor Family AT5G60850 41.613 1.43e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g03781 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03781 - - mtr:MTR_4g109980 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03781 04 46717966 46719803 Tsu04g03781 04 46717966 46719803 ECH