Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03741 ATGGTAAAGAAGATCTGTGGAATTGGAGCTGGATATGTAGGAGGTCCAACAATGGCTGTTATAGCCCTCAAATGTCCTTCAATTGAAGTAGCTGTTGTCGACATTTCTCACTCTCGCATATCAGCTTGGAATAGCGACAAGCTCCCTATCTATGAGCCTGGCCTAGAACAAGTTATACAACAATGTAGAGGAAAGAATCTCCACTTCAGCACTGATGTAGAAAAGCATGTTTATGAAGCTGATATAATCTTTGTTAATGTCAACACACCAACAAAAACAAGTGGCCTTGGAGCTGGCAAAGCTGCAGATTTAACTTATTGGGAAACTGCAGCTAGAGTGATAGCCGATGTTTCAAGATCAAACAAAATTGTTGTTGAGAAATCAACTGTTCCGGTTAGAACAGCTGAAGTAATCGAAAAGATTCTAGTCCACAATAGCAATGGCAAGATCAAGtatcaaattttgtcaaatcctGAATTTCTTTCTGAAGGAACTGCTATGCAGGATCTTCTAAATCCTGATAGGGTTCTACTCGGAGGAAATGATAGTCTTGAAGGTCAAGAAGCAATTCAAAAATTGAAAGATATATATGCTCATTGGGTGCCTCAAGACAGAATCATAACTACTAATCTTTGGTCTGCTGAACTCTCAAAATTAGCTGATAATGCTTTTTTGGCTCAAAGGATTTCATCTATCAATGCCATGTCGGCGTTATGTGAGGCTACTGGTGCTGATGTTTCACAGGTTTCTTGTGTTTTAAGCAAAAACACTAAGCTTGGTTCTAAATACTTAAATGCTAGTGTTGGTTTTGGCGGCTCTTGTTTTCAAAAAGATATACTTAATTTGGTTTATATTTGCGAGAGTAATGGACTTTTTGAAGTGGCGAATTATTGGAAAGAAGTAGTTAAGGTGAATGATTACCAAAAGAGTAGGTTTGTGAAAAAAGTTGTAACATCTATGTTCAATACAGTTTCAGGTAAGAAGATCGCTGTTCTAGGATTTTCCTTTAAGAAAGATACTAGTGATACTAGGAAAACTCCTGCGATCGATGTTTGCAAAGGTCTTTTAGCGGATAATGCTTGTTTGAGCATTTACGATCCGCGTGTTAGTGAAGAACAGATCCGAAGAGATTTGTCTACGAATGAGAGTCATTGGGATCATTCAATTCAGGCAAAGTCAACGAGTTTCACTAGCGCGAAACAGGTTAGTGTTTTTGCGGATGTTTATGAGGCTACTAAAGATGCTCATGGGATATGTGTTCTTACAGAATGGGACGAGTTTAAGACAATTGATTATCGTAAAGTGTTTGATAGTATGGTGAAACCAGCATTTGTTTTCGACGGTAGAAATGTTTTGGATGTTGATAAGTTGAGGGAGATTGGATTTATTGCATACTCAATTGGGAAGCCATTGAACCAGTGGGTGGATTGCTAG 1434 0.3794 MVKKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSDKLPIYEPGLEQVIQQCRGKNLHFSTDVEKHVYEADIIFVNVNTPTKTSGLGAGKAADLTYWETAARVIADVSRSNKIVVEKSTVPVRTAEVIEKILVHNSNGKIKYQILSNPEFLSEGTAMQDLLNPDRVLLGGNDSLEGQEAIQKLKDIYAHWVPQDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGADVSQVSCVLSKNTKLGSKYLNASVGFGGSCFQKDILNLVYICESNGLFEVANYWKEVVKVNDYQKSRFVKKVVTSMFNTVSGKKIAVLGFSFKKDTSDTRKTPAIDVCKGLLADNACLSIYDPRVSEEQIRRDLSTNESHWDHSIQAKSTSFTSAKQVSVFADVYEATKDAHGICVLTEWDEFKTIDYRKVFDSMVKPAFVFDGRNVLDVDKLREIGFIAYSIGKPLNQWVDC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03741 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 453 IPR014027 GO:0016616|GO:0051287
Tsu04g03741 477 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 4 450 IPR017476 GO:0016616
Tsu04g03741 477 Gene3D - 211 242 - -
Tsu04g03741 477 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
Tsu04g03741 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 186 IPR001732 GO:0016616|GO:0051287
Tsu04g03741 477 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 465 IPR036220 -
Tsu04g03741 477 SMART UDPG_MGDP_dh_C_a_2_a 330 454 IPR014027 GO:0016616|GO:0051287
Tsu04g03741 477 Gene3D - 1 210 - -
Tsu04g03741 477 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 3 475 - -
Tsu04g03741 477 PIRSF UDPglc_GDPman_dh 3 469 IPR017476 GO:0016616
Tsu04g03741 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Tsu04g03741 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Tsu04g03741 477 PIRSF UDPglc_DH_euk 1 477 IPR028356 GO:0003979
Tsu04g03741 477 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 3 475 IPR028356 GO:0003979
Tsu04g03741 477 Gene3D - 243 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03741 Tsu-Chr4 46383508 46386395 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00217 04 1971158 1973932 Tsu04g03741 04 46383508 46386395 ECH
Tsu04g03741 04 46383508 46386395 Tsu04g03741 04 46383508 46386395 ECH