Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03470 ATGGAAACTACCTCATTTTCCAAATGGGTCTTCACATTTTGCTTTATTTTCTGCTTAATCACTCAATTCATTCACTCTACTGTCACCTATGACAGAAAAGCAATTCTCATCAATGGACAAAGAAGAATTCTTTTTTCTGGTTCTATACATTATCCTAGAAGTACCCCtgatATGTGGGAAGATCTGATTCTAAAGGCTAAAGAAGGTGGACTTGATGTGATTGAAACTTATGTGTTTTGGAATGTTCATGAACCTTCTCAGGGCAATTACAATTTTGAAGGAAGATATGATCTAGTGAAATTCATAAAGACAATTCAGAAAGCTGGACTCTATGCTCATCTTCGCATTGGACCTTATGTTTGTGCTGAATGGAATTTTGGAGGATTTCCAGTTTGGTTGAAGTATGTTCCAGGCATTAGCTTTAGAACTGACAATGAACCTTTCAAGAAAGAGATGCAAAGATTCACTGAGAAGATTGTTGGAATGATGAAGAGTGAACACCTCTTTGAATCACAGGGTGGCCCTATAATTCTCTCTCAGATTGAGAATGAGTTTGGACCACAAAGTAAGATACAGGGTCCTGCTGGCCAAAATTATGTGAATTGGGCAGCTAAAATGGCTGTAGAGATGGGAACTGGAGTCCCTTGGGTAATGTGTAAGGAAGATGATGCACCAGATCCAGTGATAAACACATGTAATGGCTTCTATTGCGACAAGTTTACTCCAAATAGACCCTATAAGCCTACAATGTGGACTGAAGCTTGGAGTGGATGGTTTACAGAATTCGGAGGTCCAACTCACAAACGACCTGTCCAAGATTTAGCATTTGCAGTTGCTCGATTTGTGACACGAGGAGGGTCATTTGTAAACTACTATATGTATCATGGAGGAACCAATTTCGGACGAACAGCTGGAGGTCCTTTTGTAGCTACCAGTTATGACTATGATGCTCCACTAGATGAATATGGTTTGATTAGGCAGCCGAAATATGGTCATCTAAAGGAGCTTCATAAAGCTATCAAGATGTGTGAGCGAGCTTTGGTTTCAACTGACCCAATTGTTACTTCATTAGGGAGCTCCCAGCAGGCTCATGTATACTCTACAGAATCAGGAGATTGTGCTGCTTTTCTCTCAAACTATGATTCAAAATCCCCTGCTAAAGTACTGTTCAATAATATGCACTATAGTTTACCTCCTTGGTCCGTCAGCATCCTTCCCGATTGTAGAAATTCCGTCTTTAATACAGCAAAAATTGGAGTGCAAACATCGCAAATGCAAATGTTACCAACAAATACTCATATGTTCTCGTGGGAGAGTTTCGATGAGGATATTTCTTCTCTGGACGATAGCTCCTCACTCAGTGCTCCTGGTCTTCTGGAACAGATAAATGTAACGCGGGATGCAAGTGATTATCTTTGGTATATAACTAGCATTAATATAGGTTCATCCGAATCCTTTCTACGCGGAGGCGAACTCCCAACTCTTATTGTTCAGTCCACAGGCCATGCTGTACATGTTTTCATCAATGGTCAACTTTCTGGTTCTACCTATGGAACTCGGGAGTATAGGAGATTCATGCATATTGGCAAGGTAAACCTTCGTGCCGGAACAAACAGAATAGCTCTGCTCAGTGTTGCAATCGGACTTCCTAATGTGGGAACACATTTTGAGACATGGAGCACAGGAATCCTAGGTCCGGTTGCACTCCACGGACTCAACCAGGGAAAATGGGACTTGTCCCAGCAGAGATGGACTTATCAGGTTGGACTGAAAGGCGAGGCCATGAATCTTGCATCTCCTAATAGTATTTCATCTGTTGAGTGGATGCAGTCAGCAATAGTTGTGCAAAGAAATCAACCATTGACATGGCACAAGACTAATTTTGATGCACCTGAAGGGGACGAACCACTGGCATTGGATATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATTGGAAGATATTGGACTGCACTTGCTAATGGTAATTGCAATGACTGTAACTATGAAGGGTCGTTTAGACCTCAAAAGTGCCAGCTCGGTTGTGGCCAACCGACCCAACGATGGTACCATGTGCCTCGATCTTGGTTGAAACCAACTCAAAATTTATTGGTTATTTTTGAGGAACTCGGTGGAGATCCTTCAAAGATTTCACTTGTAAAGAGATCAGTGAGCAGTGTATGCGCTGATGTGTCAGAGTACCACCCAAATATTAAGAATTGGCACATTGAAAGCTACGGTAAGTCAGAAGAATTCCGTCCACCAAAGGTTCACTTGCATTGTAGCCCCGGCCAAACCATCTCTTCCATTAAATTTGCAAGCTTCGGAACTCCTCTCGGAACTTGTGGGAATTACGTGCAAGGAGCTTGCCATTCCCCTACATCCTATGCCATTTTAGAGAAGAAATGTGTAGGGAAGTCAAGATGCATAGTTACTGTATCAAACAGCAATTTCGGGAAAGATCCATGTCCAAGGGTGATGAAGCGGTTATCAGTTGAAGCTGTTTGCACGCCAGCTACTACACATTAA 2541 0.4203 METTSFSKWVFTFCFIFCLITQFIHSTVTYDRKAILINGQRRILFSGSIHYPRSTPDMWEDLILKAKEGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVKFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKKEMQRFTEKIVGMMKSEHLFESQGGPIILSQIENEFGPQSKIQGPAGQNYVNWAAKMAVEMGTGVPWVMCKEDDAPDPVINTCNGFYCDKFTPNRPYKPTMWTEAWSGWFTEFGGPTHKRPVQDLAFAVARFVTRGGSFVNYYMYHGGTNFGRTAGGPFVATSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCERALVSTDPIVTSLGSSQQAHVYSTESGDCAAFLSNYDSKSPAKVLFNNMHYSLPPWSVSILPDCRNSVFNTAKIGVQTSQMQMLPTNTHMFSWESFDEDISSLDDSSSLSAPGLLEQINVTRDASDYLWYITSINIGSSESFLRGGELPTLIVQSTGHAVHVFINGQLSGSTYGTREYRRFMHIGKVNLRAGTNRIALLSVAIGLPNVGTHFETWSTGILGPVALHGLNQGKWDLSQQRWTYQVGLKGEAMNLASPNSISSVEWMQSAIVVQRNQPLTWHKTNFDAPEGDEPLALDMEGMGKGQIWINGQSIGRYWTALANGNCNDCNYEGSFRPQKCQLGCGQPTQRWYHVPRSWLKPTQNLLVIFEELGGDPSKISLVKRSVSSVCADVSEYHPNIKNWHIESYGKSEEFRPPKVHLHCSPGQTISSIKFASFGTPLGTCGNYVQGACHSPTSYAILEKKCVGKSRCIVTVSNSNFGKDPCPRVMKRLSVEAVCTPATTH 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03470 846 PANTHER BETA-GALACTOSIDASE 3 5 836 - -
Tsu04g03470 846 Gene3D - 591 733 - -
Tsu04g03470 846 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Tsu04g03470 846 Gene3D Glycosidases 23 344 - -
Tsu04g03470 846 SUPERFAMILY Galactose-binding domain-like 583 746 IPR008979 -
Tsu04g03470 846 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Tsu04g03470 846 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Tsu04g03470 846 PANTHER BETA-GALACTOSIDASE RELATED 5 836 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Tsu04g03470 846 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Tsu04g03470 846 ProSiteProfiles SUEL-type lectin domain profile. 759 841 IPR000922 GO:0030246
Tsu04g03470 846 Pfam Galactose binding lectin domain 763 840 IPR000922 GO:0030246
Tsu04g03470 846 Gene3D - 437 581 - -
Tsu04g03470 846 Gene3D - 754 846 IPR043159 -
Tsu04g03470 846 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03470 Tsu-Chr4 43843037 43849073 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00261 01 2154403 2158894 Tsu04g03470 04 43843037 43849073 ECH
Tsu07g00304 07 2341878 2346620 Tsu04g03470 04 43843037 43849073 ECH
Tsu04g03470 04 43843037 43849073 Tsu04g03470 04 43843037 43849073 ECH