Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03011 atgaTGCCACCAAATAATAACACCACCTCACAAGATCATGACCAAAACataaaccaacaacaacaaaaacaacaagaaGTTTCATCTtcagaaacaaagaaaagaccatcatcatcatcagatgAACAAAAAGTTGCAATAAAATGTCCAAGATGTGATTCTCCCAACACAAAATTCTGTTACTATAACAACTATAGTCTCACTCAACCAAGACATTTCTGCAAAACTTGTAGAAGATATTGGACAAATGGTGGATCTTTACGTAATGTTCCAATTGGTGGTGGTTgtagaaagaaacaaaaattcaaacactcatcttcttcatcatctcaaTCCATAATTTCTAAGTACTCTTCTTCTTCACCTTCACTTGATTTTCATCTTGGTGGGTTATTACCCTTACCATTACCATTACCCTTTTCttcaaagcttcaaaatcatgCAAATCAACCTTTTTTGAATAACCAATTCTCTTCAAGTTTTCAACTTGATCATACTCTTAGCTCAAATTCATTGATGGGTCTAAATAATTTAtaccctttttcttcttcaaatggAAATGGGTTCAATGGTGCAAATGGAATGAATTTCATGAATGTGAATAGTACTACTACTAGTGTTACTAATACTACTAATAGTACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTATGAATCAAGATTTGCATTTGAAGCTTCAACAACAGAGATTAGCAACAATGTTTGGTGATGATAACAAGAAAGATGGTATTAGTAGCAGCAATGTTTTGGTTTCTAATCAAGTTAGTAGCATTGAAAAGCCTCAAACAATTTTGTTTCAGAATCTTGAGATTTCAAAGACAAATGTTCCAACAAGTGGTGATGCACCAATGGAATGGTTATTTGGGAATTCTTATTCTTCATTCATGATGACTCCTGCAACAACATCTACTATTGGTGGTGTTTGCATTAATGGTGATCATGATCATGCAAACAATAACAGTTGGATTAATAGTGGTGTTAATGCTTGGAGTGATgtgcagcagcagcagcaaccaTATACTGCTTTGCCCTAA 1059 0.2814 MMPPNNNTTSQDHDQNINQQQQKQQEVSSSETKKRPSSSSDEQKVAIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKFKHSSSSSSQSIISKYSSSSPSLDFHLGGLLPLPLPLPFSSKLQNHANQPFLNNQFSSSFQLDHTLSSNSLMGLNNLYPFSSSNGNGFNGANGMNFMNVNSTTTSVTNTTNSTSLASSIESLSCMNQDLHLKLQQQRLATMFGDDNKKDGISSSNVLVSNQVSSIEKPQTILFQNLEISKTNVPTSGDAPMEWLFGNSYSSFMMTPATTSTIGGVCINGDHDHANNNSWINSGVNAWSDVQQQQQPYTALP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03011 352 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Tsu04g03011 352 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Tsu04g03011 352 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 343 IPR045174 GO:0003700|GO:0006355
Tsu04g03011 352 Pfam Dof domain, zinc finger 47 101 IPR003851 GO:0003677|GO:0006355
Tsu04g03011 352 MobiDBLite consensus disorder prediction 1 34 - -
Tsu04g03011 352 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 16 343 - -
Tsu04g03011 352 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03011 Tsu-Chr4 37196487 37197747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03011 29 352 C2C2-Dof Transcription Factor Family AT5G65590 39.942 1.32e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g03011 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03011 - - cam:101501747 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01329 05 12107104 12108445 Tsu04g03011 04 37196487 37197747 PCT