Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02119 ATGGCATCAATCACCATAACCTCCTTGATCTTCTTTTCTTTGATCACTTTGTCACTAGCATTGGACATGTCCATGCGTAGTAACAAGGAAGTTATGACCATGTACGAGGAATGGTTGGTAAAACATCAAAAAGTGTATAATGGGTTAGGAGAGAAAGACAAAAGGTTTGAAATTTTTAAGGATAATTTAGGATTCATTGATGAACACAATGCTCAAAATTACACATACAAAGTTGGGTTGAACAAATTTTCGGATATGACTAATGAGGAATATCGTGACATGTATTTGGGCACGAGGAATGATGCCAAACGTAGAGTTATGAAAAACAAGATCACCACCGGTCACCGGTATGCTTATAGTTCCGGTGATCGGTTGCCGGTGCATGTTGATTGGAGATCCAAAGGTGCCGTTACTCATATCAAAGATCAAGGAAATTGTGGAAGTTGTTGGGCATTCTCAACAATAGCAACAGTAGAAGCTATAAACAAGATAGTGACAGGGAAGCTTGTGTCTTTATCTGAACAAGAGCTTGTGGACTGTGACAGAGCCTACAATGAAGGGTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATAATTGGAAATGGTGGCATTGACACTGACCAAGACTATCCATACAAGGGATTTGAGGGTAGATGTGATCCATCAAGGAAAAATGCTAAGGTAGTTACTATTGATGGATATGAGGATGTTCCATCATATAATGAAAATGCATTAAAGAAAGCTGTGGCTCATCAACCTGTTAGTGTTGCTATTGAGGCCTCTGGCAGGGCATTACAACTCTATCAATCGGGTGTATTTACTGGTAAATGTGGGACAAACTTGGATCATGGTGTGGTGGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTGAGAAACTCATGGGGCACAAACTGGGGTGAAGATGGTTACTTCAAGTTAGAGCGTAATGTGAAAAGCACTTCTACAGGAAAGTGTGGAATATCAATGGAAGCTTCATACCCTGTGAAGTATGGTCAAGACTCTGCAGTCACTAATtcagcttatgaaaacaatcaAGTTTTAGTTACCAGTGCTTAA 1095 0.3936 MASITITSLIFFSLITLSLALDMSMRSNKEVMTMYEEWLVKHQKVYNGLGEKDKRFEIFKDNLGFIDEHNAQNYTYKVGLNKFSDMTNEEYRDMYLGTRNDAKRRVMKNKITTGHRYAYSSGDRLPVHVDWRSKGAVTHIKDQGNCGSCWAFSTIATVEAINKIVTGKLVSLSEQELVDCDRAYNEGCNGGLMDYAFEFIIGNGGIDTDQDYPYKGFEGRCDPSRKNAKVVTIDGYEDVPSYNENALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTNLDHGVVVVGYGSENGVDYWLVRNSWGTNWGEDGYFKLERNVKSTSTGKCGISMEASYPVKYGQDSAVTNSAYENNQVLVTSA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02119 364 PANTHER CYSTEINE PROTEASE 19 349 - -
Tsu04g02119 364 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Tsu04g02119 364 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Tsu04g02119 364 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Tsu04g02119 364 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Tsu04g02119 364 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Tsu04g02119 364 Pfam Cathepsin propeptide inhibitor domain (I29) 35 91 IPR013201 -
Tsu04g02119 364 SUPERFAMILY Cysteine proteinases 27 341 IPR038765 -
Tsu04g02119 364 Gene3D Cysteine proteinases 17 343 - -
Tsu04g02119 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 349 - -
Tsu04g02119 364 SMART Inhibitor_I29_2 35 91 IPR013201 -
Tsu04g02119 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Tsu04g02119 364 CDD Peptidase_C1A 126 340 IPR039417 -
Tsu04g02119 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Tsu04g02119 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02119 Tsu-Chr4 23410362 23413266 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00431 01 3637276 3641276 Tsu04g02119 04 23410362 23413266 ECH
Tsu07g00928 07 7601360 7605082 Tsu04g02119 04 23410362 23413266 ECH
Tsu04g02119 04 23410362 23413266 Tsu04g02119 04 23410362 23413266 ECH