Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00463 ATGGTCTTCCCCTCTCTTCCAATCTATCAAGATCCACCCAACTGGTCACCACAGCAAGAAGGAATTGGTATTGGAACTCAAAACCCATCACCTCTGCAGCAGCCATCAGCTTCAACGGTGACTATTACCGTTGAAGCTGATGGCAGCTACCAAGGGTCTATAAGACATGGATCAATGACCGATCAAGCTAAGATGTCCAAGATACACCAAAGTGATGTTGGAGCAACACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTATAACAACTACAATCTTTCACAACCACGACATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGAGGTGCACTTAGAAATGTTCCTGTTGGAGGAGGTTGTAGaaagaataataaaagaagcaaaggaaattcaaTATCAAAATCAACATCAAAACCTAATCGTAATGATCATCGCCAGGTCGgtattggtggtggtggttctaGCTCAGCAAGTGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTAGGGATCTCTCATTTTCCTACACAATTCCCATTTTTGGCTTCTTTGCATCATTATAACAACAATGACTATGTTTCTCAAGGCATTGGTTCTATGGTGGCAAAGAATATTACCAATAGTACTAATACTAGTGTTGAGTTTCAACTTGGTAGTGGTTTTTCAATTGGTAATAGTACTAATGGTGGATCTTTGTTGTTATCAAATGGCATTGGTGAACAATGGAAGTTTCCGAATTCACTACAAGTTCATcaacaacagcagcaacaacCACATCAAGAGAATCACCAACAATTCCCTTTCTTGACTAGTTTGGAGCCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGATGAAACTCAAAGAAATTTTATTCGCTCTAAGGCAACGGATTCTTCAAGTGTTACTATTGGAATGGTGCCTCAAGTTAACAtagtaaaaatggaagaaaataatTGTCAAGGGTTGAGTTTGTCAAAAAATCTCTTGAATGGTTCAGGAAATAGTAGTAATCTATTTTGGAATGGAAATGGAAGTGGTAGTGGTAATGCAAATGCATGGAATGAATCTCCTAATTTCACTCCATCACCAAGCCAATTGTTATGA 1146 0.3508 MVFPSLPIYQDPPNWSPQQEGIGIGTQNPSPLQQPSASTVTITVEADGSYQGSIRHGSMTDQAKMSKIHQSDVGATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNNKRSKGNSISKSTSKPNRNDHRQVGIGGGGSSSASANSSSNNGCTNSNVNVGISHFPTQFPFLASLHHYNNNDYVSQGIGSMVAKNITNSTNTSVEFQLGSGFSIGNSTNGGSLLLSNGIGEQWKFPNSLQVHQQQQQQPHQENHQQFPFLTSLEPQIGLFQFGGENNDETQRNFIRSKATDSSSVTIGMVPQVNIVKMEENNCQGLSLSKNLLNGSGNSSNLFWNGNGSGSGNANAWNESPNFTPSPSQLL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00463 381 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Tsu04g00463 381 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Tsu04g00463 381 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 356 IPR045174 GO:0003700|GO:0006355
Tsu04g00463 381 MobiDBLite consensus disorder prediction 121 170 - -
Tsu04g00463 381 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Tsu04g00463 381 MobiDBLite consensus disorder prediction 155 170 - -
Tsu04g00463 381 MobiDBLite consensus disorder prediction 12 37 - -
Tsu04g00463 381 MobiDBLite consensus disorder prediction 9 37 - -
Tsu04g00463 381 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 27 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00463 Tsu-Chr4 4369196 4371097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00463 1 134 C2C2-Dof Transcription Factor Family AT2G37590 48.649 3.75e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g00463 zf-Dof 9.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00463 - - cam:101502096 467.618