Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00217 ATGGTGAAGATTTGCTGCATTGGTGCCGGATATGTCGGTGGTCCAACAATGGCAGTCATTGCACTTAAGTGTCCATCCATTGAAGTGGCTGTTGTTGACATATCTATATCCCGCATTGCAGCCTGGAACAGTGACCAGCTTCCGATCTATGAACCTGGCCTTGATGACGTTGTAAAGAGTTGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTTAACACCCCAACTAAAACTCAGGGTCTCGGTGCTGGCAAAGCAGCAGATTTGACCTATTGGGAGAGCGCTGCTCGTATGATTGCTGATGTCTCAAAGTCTGACAAAATTGTTGTGGAGAAATCAACTGTCCCTGTCAAAACTGCTGAGGCAATCGAGAAAATTTTGACTCACAATAGCAAGGGAATCAAATTCCAGATTCTATCAAACCCGGAATTCCTTGCTGAGGGAACCGCAATCAGAGATCTTTTTAATCCAGACCGTGTTCTTATCGGAGGCAGGGAAACTCCCGAAGGCCTGAAAGCTGTTGAAACATTGAAGAGTGTTTATGCTCAATGGGTTCCCGAGGAACAAATTCTAACCACAAATCTCTGGTCTGCAGAGCTCTCTAAGCTTGCTGCTAACGCCTTTTTGGCTCAGAGGATTTCGTCTGTTAATGCAATGTCAGCACTTTGCGAGGCAACCGGGGCAAATGTTCAACAAGTGTCCTTTGCTGTCGGCACTGACTCAAGGATTGGACCCAAGTTCCTCAATGCTAGTGTCGGTTTTGGTGGATCCTGCTTCCAGAAGGATATCTTGAACCTTGTCTACATCTGTGAGTGCAACGGCCTTCCTGAGGTTGCGGAGTACTGGAAACAAGTTATCAAGATTAACGATTATCAGAAGAGCCGTTTTGTGAACCGTGTAGTTGCATCTATGTTCAACACGGTTTCAAACAAAAAGATTGCTATTCTTGGATTTGCATTCAAGAAAGATACCGGTGACACAAGGGAGACTCCCGCCATTGATGTTTGCCAAGGACTACTCGGCGATAAAGCAAATCTGAGCATATTCGACCCACAAGTTACCGAGGACCAAATCCAGAGGGATCTATCCATGAACAAGTTTGACTGGGACCATCCTATCCATTTGCAGCCAACTAGTCCAACAACTGTGAAGAAAGTGAGTGTGGTTTGGGATGCATATGAAGCAACAAAAGATGCACATGGTATTTGCATTCTGACTGAATGGGATGAATTCAAGAATCTTGATTATCAGAGGATTTATGAGAACATGCAAAAACCAGCATTTGTTTTTGATGGAAGGAACATTGTGGATGCTGAGAAGCTACGTGAGATTGGTTTCATTGTTTATTCAATTGGAAAACCATTGGATGCATGGCTCAAGGATATGCCAGCTGTGGCATAA 1443 0.4456 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISISRIAAWNSDQLPIYEPGLDDVVKSCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIRDLFNPDRVLIGGRETPEGLKAVETLKSVYAQWVPEEQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIFDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGICILTEWDEFKNLDYQRIYENMQKPAFVFDGRNIVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00217 480 Gene3D - 241 478 - -
Tsu04g00217 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Tsu04g00217 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 480 - -
Tsu04g00217 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Tsu04g00217 480 Gene3D - 209 240 - -
Tsu04g00217 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 463 IPR036220 -
Tsu04g00217 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 IPR001732 GO:0016616|GO:0051287
Tsu04g00217 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Tsu04g00217 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Tsu04g00217 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Tsu04g00217 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Tsu04g00217 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Tsu04g00217 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Tsu04g00217 480 Gene3D - 1 208 - -
Tsu04g00217 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 201 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00217 Tsu-Chr4 1971158 1973932 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00217 04 1971158 1973932 Tsu04g03741 04 46383508 46386395 ECH
Tsu04g00217 04 1971158 1973932 Tsu04g00217 04 1971158 1973932 ECH
Tsu05g02018 05 23487011 23489585 Tsu04g00217 04 1971158 1973932 ECH
Tsu06g02223 06 28021906 28023303 Tsu04g00217 04 1971158 1973932 PCT