Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00160 ATGTTGGAGATAAAAGACTCTGCAATTAAACTGTTCGGTAAAACAATTCCGGTGCCGGAGATTCTTGTCGAACCTTCGGCTTTATCTTCtggtgatgttgttgatgaGAGTATTGAATCTATTGATGATGAAAATCTTGATTCCTCTACAAACTCTTCAAGGGAGTCACATAATACTAGAGATGATGCACATGAGCAAGAAATTGAGAAGGACACATTGGGAGAAAAACAAGTTAATGAAAAGAACGAAGGAGTCCCTACGCAATCGACCGAAGAATTTACCAATCCAGATGCAACCTCTAGGACTGAAGAAGAATCTATTATTGTGTCCACCGAAAGGGACGCTGCTACGTTGAAAACTTCAAAgaccgaagaagaagaagaagaacaagatgaGACAAGTAATTCACAAGATAAGAACCTCAAAAAACCTGATAAAATAATTCCTTGTCCCAGATGTAGAAGCATGGACACAAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGAACCATGAGAAACGTACCTGTAGGTGCCGGTCGAAGAAAGAATAAGAATTCTTCTTCTCACTATCGTCAGATAATTGTCTCTGAAGCAACACTCCAAAGTTCTCGGATACACCCTTCCCTGAAATGCAACGAAGTTCAAAGAATTCATGTTCCTCATGCAAGTGGAGAAAAAGGTGATGATCAATCCAATAAATCATCGGTTACATCGACAAAGTCTATGGAAGTTTCAAGTGCCAATGTATCCCAAGAACAAGGTATGCAAAATGGCCATAACTTCTCACCGCAAGGGGCCTACTTTCCTCCAGGAACTCCTTGGTCTTTCCCCTGGAATCAAGTCCAATGGAGCTCATCAATTCCACCACCAACTTTTTGTCCACCGGGATTCTCCATGCCATTCTATCCTGCGACATCTTACTGGGGTTGTACCGTGCCAGGGGCATGGAACCTTCCATGGCAAGCACAACCGACGTCTTCACCAAATGGTGCAAACCCTAACTCTAGTCCAAACTCTCCAACATTAGGGAAACATTCAAGGGAAGACAACATGCTTAAATTGAGCAAAGATGGTAGGAAAGAAAGTAGAGAAGAAAAGTGTTTGTGGTTTCCAAAAACTTTGAGGATCGATGACTCGGGAGAAGCAGAAAAAAGCTCTTTATGGACAACACTTGGGATTAAAAATAACAACGCCGACTCAATTTCTTCAGGAAGACTCTTTAATGCATTCTCTTCAAAGTGTGATGAAAGAAATCACTCAGTACAAGCGTCTTCAATCTTGCAGGCCAATCCAGCAGCTTTGTCTAGGTCACTTAACTTTCGTGAAACTTCATAA 1386 0.4026 MLEIKDSAIKLFGKTIPVPEILVEPSALSSGDVVDESIESIDDENLDSSTNSSRESHNTRDDAHEQEIEKDTLGEKQVNEKNEGVPTQSTEEFTNPDATSRTEEESIIVSTERDAATLKTSKTEEEEEEQDETSNSQDKNLKKPDKIIPCPRCRSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRQIIVSEATLQSSRIHPSLKCNEVQRIHVPHASGEKGDDQSNKSSVTSTKSMEVSSANVSQEQGMQNGHNFSPQGAYFPPGTPWSFPWNQVQWSSSIPPPTFCPPGFSMPFYPATSYWGCTVPGAWNLPWQAQPTSSPNGANPNSSPNSPTLGKHSREDNMLKLSKDGRKESREEKCLWFPKTLRIDDSGEAEKSSLWTTLGIKNNNADSISSGRLFNAFSSKCDERNHSVQASSILQANPAALSRSLNFRETS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00160 461 MobiDBLite consensus disorder prediction 238 283 - -
Tsu04g00160 461 MobiDBLite consensus disorder prediction 81 105 - -
Tsu04g00160 461 MobiDBLite consensus disorder prediction 246 280 - -
Tsu04g00160 461 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 236 460 - -
Tsu04g00160 461 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 222 - -
Tsu04g00160 461 MobiDBLite consensus disorder prediction 338 362 - -
Tsu04g00160 461 Pfam Dof domain, zinc finger 146 202 IPR003851 GO:0003677|GO:0006355
Tsu04g00160 461 MobiDBLite consensus disorder prediction 338 366 - -
Tsu04g00160 461 ProSiteProfiles Zinc finger Dof-type profile. 148 202 IPR003851 GO:0003677|GO:0006355
Tsu04g00160 461 ProSitePatterns Zinc finger Dof-type signature. 150 186 IPR003851 GO:0003677|GO:0006355
Tsu04g00160 461 PANTHER CYCLIC DOF FACTOR 2 236 460 IPR045174 GO:0003700|GO:0006355
Tsu04g00160 461 PANTHER CYCLIC DOF FACTOR 2 1 222 IPR045174 GO:0003700|GO:0006355
Tsu04g00160 461 MobiDBLite consensus disorder prediction 40 145 - -
Tsu04g00160 461 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00160 Tsu-Chr4 1557722 1560566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00160 4 461 C2C2-Dof Transcription Factor Family AT5G39660 40.200 7.51e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu04g00160 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00160 - - aprc:113862693 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00160 04 1557722 1560566 Tsu03g01621 03 16173113 16176180 ECH
Tsu04g00160 04 1557722 1560566 Tsu04g00160 04 1557722 1560566 ECH
Tsu04g00160 04 1557722 1560566 Tsu06g02119 06 26591846 26595048 ECH
Tsu05g01889 05 20776737 20778858 Tsu04g00160 04 1557722 1560566 ECH