Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03145 ATGGAGAAACTTATTCACATAATCTGTTTCTTCTTGTTAACCACTTTGTTACAAACATCACACTGTCAACCACAACAAcctcaaactcaaactcaaaccaTTCACAATTATTCCATTTGTAGTGAACAATTCTACAACTGTGGAAATCTAACCAATATCTCTTATCCATTTTGGGGACATAACCGACCCTCTCACTGCGGCGCTGGTGACTTCTTTCGCCTCAACTGTTATCAAAGTCAAAAGACTAATACGTCTACAATTCAATTAGGCTCACAAAATTTCACAGTACGAAATATTAGCCTCACAACTTACACCATGAAATTGAAGCGAACCGATCTTGCATACGACGCTTGTACACCGCAATTCAACGATACTTACTTAAGTCCAAATTTGTTCCAATTTCCAACAAGAACACAAAACATAAGCTTATTCTACAATTGTTCATCTTATGTCATGTCTTATGCTAACTACAAATCTTTGTGTGGAACACAGAATAATGCTATATGTTTCGAGGATGCAAAAGGTAGTAATAGTATTTTGGAACAAATTCCTGAGTTAAAGGGATGTGGTAATCATATCACAATACAAGCAGATTATGCTTTTGAGCCTGTTACTAATCTTGGTGTAATTGGAAGTGATGAtcttaatcaaattttatatgaGGGGTTTCAGGTGAAATATGTTGTGAATGAAGACTGCATAAGATGCTTGGGAATTGAAGGGTATTGTTGGAATAATACTGGCTTTGATAATGTTCAGTCTTGCTATTATATTTATAGCCCTGATGGATATAATTCATCTGCCACACATTCTGTTCTCAAAAGTAAGCTGTGGAAGCAatggaaaatgaaaatcattctAGGAAGTGCAGGTGCAACATTAGTAGGATTATCAATATGTATCAGTATCTTTTGCTTCAAGTACAAgtcaagaaagaataacaaagaCATTGAAGTATTCTTAAAAACTCATGAAGCTTTTAGTGTTAGAAGATACAAATACTCACATATAAAGAAAATGACCAACAACTTCAAAGTAAAATTAGGACAAGGTGGTTATGGTACTGTGTACAAAGGAAAGCTACTCAATAATTGCCCTGTGGCCGTAAAGATATTGAACAAATCAAAAGGAAAGGGtgaagaatttatgaatgaggtTTCTAGCATTACTAAAACCTCTCACGTTAATGTTGTCGCCCTTCTTGGATTTTGTTTAGAAGGCCGGAAAAAAGCTCTAATCTATGAATTTATGTCACATGGTTCTCttgacaaatttatttataataaaggACCTGAAACCGTTCCATCTTTGAGTTGGGAGATTCTTTATCAAATTGCGAAAGGGATAGCTCGAGGGTTAGAGTATTTACATAGGGGATGTAGCACTCGAATTTTACATTTTGACATCAAGCCACATAACATTCTTTTAGATGAGAATTTTTGTCCAAAGATATCGGATTTTGGGCTTGCAAGACTTTGCCCTAGACCAGATAGCACTATTTCAATGTCAGATGCTAGAGGGACAATCGGCTATGTAGCTCCTGAGCTATGGAATAGAAATTTTGGAGGTGTTTCACACAAGTCTGATGTTTATAGTTTTGGAATGATGCTGATGGAAATGGTTGGAGGGAGAAAAAACATTAATGCTGATGCAAGTCAATCAAGTGAGATATACTTTCCTCATTGGGTATACAAGAAGCTTGATCAAGGCCGTAATTTGAGACCGGGTGAAGTCATTGCCACAGAAGAAGATGAGATCGCAAAGAGAATGACCATCGTGGGCCTATGGTGCATTCAAACATTTCCAAATGACAGACCTACAATGAGTAGAGTGATTGAAATGTTAGAAGGCAATGTAAATTCATTAGAAATACCACCAAAACCTATTCTTTCTTCTCCTACTAGATCAATAACAGAATCTTCAGCTTCATAA 1932 0.3437 MEKLIHIICFFLLTTLLQTSHCQPQQPQTQTQTIHNYSICSEQFYNCGNLTNISYPFWGHNRPSHCGAGDFFRLNCYQSQKTNTSTIQLGSQNFTVRNISLTTYTMKLKRTDLAYDACTPQFNDTYLSPNLFQFPTRTQNISLFYNCSSYVMSYANYKSLCGTQNNAICFEDAKGSNSILEQIPELKGCGNHITIQADYAFEPVTNLGVIGSDDLNQILYEGFQVKYVVNEDCIRCLGIEGYCWNNTGFDNVQSCYYIYSPDGYNSSATHSVLKSKLWKQWKMKIILGSAGATLVGLSICISIFCFKYKSRKNNKDIEVFLKTHEAFSVRRYKYSHIKKMTNNFKVKLGQGGYGTVYKGKLLNNCPVAVKILNKSKGKGEEFMNEVSSITKTSHVNVVALLGFCLEGRKKALIYEFMSHGSLDKFIYNKGPETVPSLSWEILYQIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCPRPDSTISMSDARGTIGYVAPELWNRNFGGVSHKSDVYSFGMMLMEMVGGRKNINADASQSSEIYFPHWVYKKLDQGRNLRPGEVIATEEDEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGNVNSLEIPPKPILSSPTRSITESSAS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03145 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Tsu03g03145 643 CDD STKc_IRAK 348 617 - -
Tsu03g03145 643 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Tsu03g03145 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 642 IPR045874 GO:0004672
Tsu03g03145 643 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 19 642 - -
Tsu03g03145 643 SMART serkin_6 342 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03145 643 ProSiteProfiles Protein kinase domain profile. 342 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03145 643 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Tsu03g03145 643 SUPERFAMILY Protein kinase-like (PK-like) 321 616 IPR011009 -
Tsu03g03145 643 Gene3D Phosphorylase Kinase; domain 1 314 416 - -
Tsu03g03145 643 Pfam Protein tyrosine and serine/threonine kinase 344 615 IPR001245 GO:0004672|GO:0006468
Tsu03g03145 643 Pfam Wall-associated receptor kinase galacturonan-binding 40 109 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03145 Tsu-Chr3 43495353 43499067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03145 36 641 Receptor kinase-like Gene Family AT1G66910 38.401 2.22e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu03g03145 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03145 03 43495353 43499067 Tsu02g00148 02 1109748 1113000 PCT