Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03102 ATGGATCCGCAACTTCTCTCCACCGCGTCAACTACCAATCCGCCTAATATGGTCCAACAAAATTATCCTGAATCGGTAGAGTCGTTATCATCACCATCACCACCACAGCCACCACCACGATCACGTGAAATAATGAACGAAGAGTCTTTACCTAATGTCCCCGGATCCAAGCTTCGCCTCATGTGCAGCTATGGCGGACACATTATGCCGCGCCCGCATGATAAATCCTTGTGTTATGTCGGTGGTGACACACGAATTGTGGTGGTTGACCGGAGTGCTTCCCTTAGAGATCTTTGTTCGCGCCTTTCGAGAACAATTCTTAATGGAAGACCCTTTACTCTAAAATACCAGCTTCCAAATGAAGACCTTGATAACCTCATCACAGTAACATCAGATGAAGATCTTGATAATATGATCGAAGAATACGATCGAATAGCATCTTCAGCAATGAAACCTTCATCTTCAAGACTCAGAGTGTTTCTTTTCTTCACAAAACCAGATTCTACTCTTTCAATGGGATCTTTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAATCCTCTCAAGGGGTGTGTCAGATTCAGCAGGAGATTCTTTTGTGAATCTTGATAATATTCCTGCTAGTGATTCAAGTAACAACTTGGAATCTCAAGGTGTAGCAGCAGCAGAGTCATTGAATATCCTTGAAGacatcaacaacaataacaacaatgttAAGAATGTTTTTGATGTTGTTAATGTTGCACCTGGTTCACCTATGCTTGAGAATAgtctatcttcttcttctttgtctcCTTCAATGGCTAATTTACCTCCGATTCGTGTTCGTGTTGACGAAACCGGTGGTAGCAGGCTTCAACAAGAGAATAAAGTTGGAATGAAACAAGATGGTGGTTATGTTGTTTCTTATGCTAATGTGGCTATGGGTGCAATTCCTTCAGCTGGAGTTGTAACTACTACTGCTACTGTTAGTGATGTTAATTTGAATAATAGGGTTGTTTCTGATGATGAGCGATCAGATTATGGAGGAGTAATTGGATCTCGAAAACCGCCTTTGCCATTGCAACTTGTTCAACCAAGGACTGGTGGTGGTGGGTTGAGTGTTCCTTCACCAGATTCAGTTACAAGTGATAGCAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATCGTTTATCATCAAGAACAAGTTCAACCTACAAACATAGACAACAACAAAGCTCAAGATTCTAGTTACATGTTACCACCACAAATGGATCAAAATCAACAACTTCAACaaccaccacaacaacaacaacaatttgtTCATTCCAACACTCACTATATCCACCATCCTACAACCACAAACCAAGTTCCAATCTCATCATACTACCAAGTTTATCCCCCacaatcacaacaacaacaaattcacAATCCAATTGGTCAACAACAAATTGGTCAACAACAATATCCAATTTATGTAATGCCTATTGGATCAACACAACAACCATACAACATGACATTACAACATAATATAAATGACCCTAATGTTGTAGCTTCTAGTAGGCCAATAATACCTCAAAGTGGTACTCCACCAATTTATCCTAATAAGTCACCTAACCCTAATGTGGCATCAAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTTTGCCTCAATTTCATCATCAACCACAACATCCTATTAATGTAGCTCCTTCTAGTGGTACTAATTATGGTTATGAATATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACAACAAACTAATGCTCCATTGGTTACTCAGTATCAATCCATGACTCCTGCAGCTGCAGCAGCAGCATTATCAGATGCTTCCAATCAATTTCCTGCAGATAATGTTCAGCAGCCAAATAGAACTTCTCAACCGGTATAA 1944 0.3781 MDPQLLSTASTTNPPNMVQQNYPESVESLSSPSPPQPPPRSREIMNEESLPNVPGSKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSAMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNIPASDSSNNLESQGVAAAESLNILEDINNNNNNVKNVFDVVNVAPGSPMLENSLSSSSLSPSMANLPPIRVRVDETGGSRLQQENKVGMKQDGGYVVSYANVAMGAIPSAGVVTTTATVSDVNLNNRVVSDDERSDYGGVIGSRKPPLPLQLVQPRTGGGGLSVPSPDSVTSDSSSIASTNSFSKIVYHQEQVQPTNIDNNKAQDSSYMLPPQMDQNQQLQQPPQQQQQFVHSNTHYIHHPTTTNQVPISSYYQVYPPQSQQQQIHNPIGQQQIGQQQYPIYVMPIGSTQQPYNMTLQHNINDPNVVASSRPIIPQSGTPPIYPNKSPNPNVASNSTFVQVPSNQFQQQYVGLPQFHHQPQHPINVAPSSGTNYGYEYGGNVEGQVYYTQQQTNAPLVTQYQSMTPAAAAAALSDASNQFPADNVQQPNRTSQPV 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03102 647 CDD PB1_UP2 61 162 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 1 52 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 619 647 - -
Tsu03g03102 647 SMART PB1_new 72 162 IPR000270 GO:0005515
Tsu03g03102 647 Pfam PB1 domain 73 162 IPR000270 GO:0005515
Tsu03g03102 647 ProSiteProfiles PB1 domain profile. 57 162 IPR000270 GO:0005515
Tsu03g03102 647 Gene3D - 77 163 - -
Tsu03g03102 647 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 640 - -
Tsu03g03102 647 SUPERFAMILY CAD & PB1 domains 73 173 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 404 438 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 629 647 - -
Tsu03g03102 647 PANTHER OS05G0427100 PROTEIN-RELATED 1 640 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 342 389 - -
Tsu03g03102 647 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03102 Tsu-Chr3 42783579 42786904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03102 57 191 MAP Kinase Kinase Kinase AT5G57610 44.853 2.86e-27 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00072 02 451028 452509 Tsu03g03102 03 42783579 42786904 ECH
Tsu01g04839 01 55437814 55440846 Tsu03g03102 03 42783579 42786904 ECH
Tsu03g03102 03 42783579 42786904 Tsu03g03102 03 42783579 42786904 ECH