Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02916 ATGAATTGTGAAGGTGACATGTGTGTTAATGATCATTCTAGTATCATGCTCTTTGGTAAGAAGATTCCGGTGCCGGAATATCATTTTCCGGCAACATCTCAAAAGGGTTCTCAGATTCAAACCAATTCTACAACCATGaatgCTTGCAGTAACTCAAAACAAACAAGAATCGAAATGTCTCATACTCAAAATATTGAGAAGTCGAAGAACTCTtctaaagaagaaaatgaatcaAAAGTTACTACAAGCACAGTGGAAGATACTATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTCAAGAAACCAGACAAGATTGTTCAATGTCCGAGATGCAACAGTTTCGACACgaaattttgttatttcaaCAACTACAATGTCAATCAACCTCGGCATTTCTGTCGCAACTGTCATAGATATTGGACCGCAGGTGGAACAATGAGAAACGTTGCTGTCGGTGCGGGGAGACGGAAGAACAAACACATAGGTTCACAGTATCGTCACATGATTGTAGCGTCCGGAAGAACTTCGACCGCAAATTTAGAAACCAATGACTCTCTCCAACATGATAATGGTACTGTCTTAAAATTTGGTCTAGATGTTGATGCAAGTGCTAACAATTTTACGGAAAATCGAGaagaatcatcatcattatgTATATCTTCAGTGACAAACGGTTATACTCGAGGAACCGAGTTATCCGAATCCGAACATAATAATAGGTCAAAACCTATGCAGAGCTACCCTGCCACTTCATGGATGATTCCATTGAATCAAAGTTGGAACAATGTTACTTCCATGGTTCAATCTTCTATGCAGATGTATCCTACTACAATGCAGTGGTGTCACGCGCCTATGGTTGCAGTTACGAACATTTTCACACCAAACATTGGCTTGCAATTTGTTCCTGGTTCATATGGAAATGGAAATGTTTCAATTGGTTCAAATGGTTGCATTTCACCCTCTTCATCTACTACTAGTAACAGTTTAGGTAATGGATCACCAATACTTGGAAAGCACACTAGAGATTCTGTTTTGACGGATGAAGAGAAACCGGAAATGTGTCTTTTCGCACCGAATACTCTTAGAATTGATGAAACAAATCTTGAATAG 1113 0.3783 MNCEGDMCVNDHSSIMLFGKKIPVPEYHFPATSQKGSQIQTNSTTMNACSNSKQTRIEMSHTQNIEKSKNSSKEENESKVTTSTVEDTMETSSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRNVAVGAGRRKNKHIGSQYRHMIVASGRTSTANLETNDSLQHDNGTVLKFGLDVDASANNFTENREESSSLCISSVTNGYTRGTELSESEHNNRSKPMQSYPATSWMIPLNQSWNNVTSMVQSSMQMYPTTMQWCHAPMVAVTNIFTPNIGLQFVPGSYGNGNVSIGSNGCISPSSSTTSNSLGNGSPILGKHTRDSVLTDEEKPEMCLFAPNTLRIDETNLE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02916 370 MobiDBLite consensus disorder prediction 60 81 - -
Tsu03g02916 370 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Tsu03g02916 370 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Tsu03g02916 370 PANTHER CYCLIC DOF FACTOR 3-LIKE 11 367 - -
Tsu03g02916 370 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Tsu03g02916 370 PANTHER CYCLIC DOF FACTOR 2 11 367 IPR045174 GO:0003700|GO:0006355
Tsu03g02916 370 MobiDBLite consensus disorder prediction 58 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02916 Tsu-Chr3 39312791 39315023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02916 14 366 C2C2-Dof Transcription Factor Family AT5G39660 32.854 4.06e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu03g02916 zf-Dof 8.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02916 - - mtr:MTR_6g027460 440.654