Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02238 ATGGGTTTATCTTCTCTTCACGTTTGCAATATGGAATCATCTGCTGATCATTGGTTACAGGGCACAATTCACGAGGAGTCAGGAATGGATTCATCTTCACCAATATCTGGTGACATGCTAACATGTTCAAGATCATCATCAATGATAGATCAAAGGAGGCTAAGACCACCACATGATCTATCTCTGAAATGTCCGAGGTGCGACTCAACTCACACAAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTAAAGGTGGAACTCTTAGAAACATTCCTGTTGGTGGAGGTtgtagaaaaaacaaaaaagtttctAACAAAAAATCTAATGATAATAATCACCATTTAGCTTCTAATAGTATTCAAAACCAACCACATCATGTTCCTTCTTATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAATAAGTATAGTAATGTTGGTATGCTTGAAAATCCTAGACCTATTGATTTCATGATGGAAAGTAAATTAGAAGGTATAATTGGAAGTAGTTCTaggaattttgataatttttttggaaatgGTGATCATATGAGTATGAATATGGGAGTTGATATGATGAATGGTACTCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGTATGTCATTTGATGGAGgaaacaataacaataacaatggtGGTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCTTATGATGCTAATGATGAAGATCATAATGATGGGTCAATTGATGTGAAACCAAACCCTAAATTATTGTCAATTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGTTATGGATCATGGAGTGGTAGTAGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAATGGTTGA 1029 0.3362 MGLSSLHVCNMESSADHWLQGTIHEESGMDSSSPISGDMLTCSRSSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDNNHHLASNSIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNFFGNGDHMSMNMGVDMMNGTQNGLSQNFHHAFGGMSFDGGNNNNNNGGYLMDSCQRLMLPYDANDEDHNDGSIDVKPNPKLLSIEWQQDQGCSDVGKESFGYGSWSGSSMMNGYGSSTTNPLING 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02238 342 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Tsu03g02238 342 PANTHER - 14 331 - -
Tsu03g02238 342 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Tsu03g02238 342 MobiDBLite consensus disorder prediction 124 148 - -
Tsu03g02238 342 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
Tsu03g02238 342 MobiDBLite consensus disorder prediction 108 148 - -
Tsu03g02238 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 331 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02238 Tsu-Chr3 24779081 24781315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02238 1 340 C2C2-Dof Transcription Factor Family AT5G62940 41.266 7.91e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu03g02238 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02238 - - gmx:100806697 432.95