Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01621 ATGATTGAAACTAAAGATCCTGCAATTAAGCTCTTTGGTAAGAAGATTCTCTTTCCTGGGGAAGTTGAACTTATTATTGATGGTGACGAAAATGTTTCGCCGGCTGCGGCTATGGatgtagaagaagaagagagagatttTGGTGAATCTGAAAATGAGGATGAAGAAGGAATCGAGAAGGATCATGGAGCAGAAAATGataatgagaaaaagaaagaggcTGATCCTCCAAATGCTGAAGACaccaagaacaacaacaattcAGCACCAAAAAGATTAGCTGGGCAAATTCAAAACCCAAAAACACCTTCAATAGATGAAGAAACATCAAAATCCGAAAAGGAACAAAGCGACGCAGCAACAAACAACAACACTCAAGACAAAACACTAAAGAAACCTGACAAATTACTCCCGTGTCCACGCTGCAATAGCATGGACACGAAATTTTGTTACTACAACAATTACAACATCAATCAGCCGCGCTATTTCTGCAAGGCGTGTCAAAGATACTGGACCGCGGGCGGAACCATGAGGAATGTTCCGGTCGGTGCAGGGAGAAGAAAAAGCAAGAGCAATACTTCGTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGAATCATTTCCCCTAACGGATCTCATcatcttcaaaattttaaaaccaATGGTAGAGTCCTTAGTTTTGGATTGGATCATCCACAAATCTGTGATTCAACGTCAAATGTTTTCAATCCATCGGAGAAAAACGGTCTTAACAACACTCAAAATAATGGCGACCAGTGCTCGAACGCATCTTCTATTACAGTTTCAAAATCTATAGAGGAAAGTGGCAAAACCATGTCACAAGAATCAttaccaaaacaaaataatggTTTCATTCCTCAAGTTCCATGTATGACTAGTGTTCCTTGGCCTTATCCTTGGAGTACCGGCACAATTCCCTCCCCGCAAACTTTGTATCCTCCGGGATTTCCCATGTCATTTTACCCTAATCCTTTTTGGAATTGCGGTGTTCCGGGGAATTGGAATGTTCCTTGGTTTACATCTCATACTTCTGCGACAACTCCTAGGTCCCCGAACTCTAGTCCGAAATCTCCAACACTCGGGAAGCACTCGAGGGATGAAGACGACAACATAGATAAACAAGACAATTTGCAAAACTATGAATCACCAAAACAAAGAAATGGGTGTGTTTTGATTCCCAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCAATATGGGAAACACTTGGAATTAAGAATGAAGTTATGAGTAGGGGAGGTATGATTAAAGCATTTCAATCAAAGAATGATGGTAAAAAACATCATGTTCAAACCTCTCCATTGTTGTTAGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAAAACTCTTAA 1428 0.381 MIETKDPAIKLFGKKILFPGEVELIIDGDENVSPAAAMDVEEEERDFGESENEDEEGIEKDHGAENDNEKKKEADPPNAEDTKNNNNSAPKRLAGQIQNPKTPSIDEETSKSEKEQSDAATNNNTQDKTLKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKSKSNTSSHYRHITISEALDAARIISPNGSHHLQNFKTNGRVLSFGLDHPQICDSTSNVFNPSEKNGLNNTQNNGDQCSNASSITVSKSIEESGKTMSQESLPKQNNGFIPQVPCMTSVPWPYPWSTGTIPSPQTLYPPGFPMSFYPNPFWNCGVPGNWNVPWFTSHTSATTPRSPNSSPKSPTLGKHSRDEDDNIDKQDNLQNYESPKQRNGCVLIPKTLRIDDPNEAAKSSIWETLGIKNEVMSRGGMIKAFQSKNDGKKHHVQTSPLLLANPAALARSLNFHENS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01621 475 MobiDBLite consensus disorder prediction 372 387 - -
Tsu03g01621 475 MobiDBLite consensus disorder prediction 274 293 - -
Tsu03g01621 475 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Tsu03g01621 475 MobiDBLite consensus disorder prediction 355 397 - -
Tsu03g01621 475 MobiDBLite consensus disorder prediction 57 79 - -
Tsu03g01621 475 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Tsu03g01621 475 PANTHER CYCLIC DOF FACTOR 2 1 474 IPR045174 GO:0003700|GO:0006355
Tsu03g01621 475 MobiDBLite consensus disorder prediction 33 137 - -
Tsu03g01621 475 PANTHER CYCLIC DOF FACTOR 1 1 474 - -
Tsu03g01621 475 MobiDBLite consensus disorder prediction 355 371 - -
Tsu03g01621 475 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Tsu03g01621 475 MobiDBLite consensus disorder prediction 42 56 - -
Tsu03g01621 475 MobiDBLite consensus disorder prediction 80 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01621 Tsu-Chr3 16173113 16176180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01621 1 473 C2C2-Dof Transcription Factor Family AT3G47500 45.309 4.07e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu03g01621 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01621 - - gsj:114409713 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00160 04 1557722 1560566 Tsu03g01621 03 16173113 16176180 ECH
Tsu06g02119 06 26591846 26595048 Tsu03g01621 03 16173113 16176180 ECH
Tsu05g01889 05 20776737 20778858 Tsu03g01621 03 16173113 16176180 ECH
Tsu03g01621 03 16173113 16176180 Tsu03g01621 03 16173113 16176180 ECH