Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00874 ATGGCTGCCAATGCCCCCATCACCATGAAAGAAGCCTTAACGTTGGGAAGCGTTGGGATCAATCCACAATTCATAACGTTCACTCATGTTACGATGGAATCTGAGAAATTTATTTGTGTTAGAGAAACTGCTCCTTCTAATAGTGTTGTTATGATTGATATGAATATGCCAATGCAACCTTTAAGACGACCTATTACTGCTGATTCTGCTCTTATGAACCCTAATACCAGAATTCTTGCTCTTAAAGCTCAAGTTCCTGGAACTACTCAGGATCATTTGCAAGTATTTAATATTGAAACGAAAACAAAGATGAAATCATATCAAATGAATCAACAGGTTGTGTTTTGGAAGTGGGTAACACCAAAGTTGTTAGGCATAGTCACTCAGTCATCTGTGTATCATTGgtcaattgaagGTGATGGTGAGCCAGTGAAGGTGTTTGATCGAACAGCTAATCTGGCAAATAATCAGATCATTAATTATCGTTGTGATCCTACTGAAAAATGGTTGGTTTTGATTGGAATTGCTCCTGGTTCTCCTGAGAGACCACAACTTGTAAAAGGAAACATGCAACTCTTCGCAGTGGATCAACAACGGAGTCAGGCTCTCGAAGCACATGCTGCCTCATTTGCCTCGTTTAGAGTTACTGGAAATGATAAGGATTCGATTCTTATTTGTTTTGCATCCAAGACCATTAATGCTGGACAGGTTACTTCAAAGATGCATGTCATTGAACTTGGTGCCCAGCCAGGCAAGCCATCATTTACTAAAAAACAAGCAGATCTGTTCTTTCCTCCAGACTTTGCTGATGACTTTCCTGTATCAATGCAGATTTCAAATAAATATGGCTTGATATATGTTATCACAAAACTTGGGCTTTTATTTGTCTATGATATGGAGACTGCCACTGCAGTTTACAGAAATAGAATCAGTCCCGATCCTATATTTTTGACCGCAGAAGCATCATCGGTAGGGGGATTTTATGCCGTTAATAGACGCGGCCAAGTATTGCTTGCTACTGTGAATGAGGCAACCATTGTACCTTTTGTTAGTAGCCAGTTAAACAATTTGGAACTTGCTGTTAATCTTGCTAAAAGAGGAAACCTCCCTGGCGCAGAAGAATTGGTTGTTCAGCGTTTTCAAGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCAGAATCACCACGAGGAATACTTCGTACTCCTGACACAGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCTGGACAGACACCACCACTGTTGCAATACTTTGGAACTCTGTTAACCAGGGGTAAACTCAATGCTTTTGAGTCGTTGGAACTGTCACGACTTGTCGTAAATCAGAACAAAAAGAATCTTTTAGAAAATTGGCTAGCAGAGGACAAACTGGAATGCAGTGAGGAGCTTGGTGACCTTGTGAAGACAGTTGATAATGACCTTGCACTGAAAATTTACATTAAAGCTAGAGCTACACCGAAAGTTGTTGCAGCTTTTGCGGAGAGGAGGGAATTTGACAAGATCCTGATTTATTCCAAGCagGTTGGATATACACCTGATTACATGTTCCTTTTGCAAACAATTTTACGGACAGATCCACAGGGTGCTGTGAATTTTGCTCTCATGATGTCTCAAATGGAGGGAGGTTGCCCCGTTGACTACAACACAATAACTGATCTCTTTCTTCAGAGGAATTTGATCCGCGAGGCAACAGCATTTTTGTTGGATGTGCTAAAGCCAAACCTACCTGAACATGGATATCTTCAAACAAAGGTTCTGGAAATAAATCTTGTGACGTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGGACAACTCTGTGAAAAGGCTGGCCTTTTCATACGCGCTCTTCAGCATTATAGTGAGTTGCCTGATATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGTCATTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTTGAGTGTATGAAAGATCTTTTATTGGTCAACCTTAGGGGCAATCTTCAGATAATTGTTCAGACTGCTAAGGAATATTCCGAGCAGCTGGGAGTTGATGCATGCATTAAACTCTTTGAGCAATTTAAATCCTATGAAGGACTATATTTTTTCTTGGGTTCATACTTGAGCTCCAGTGAGGATCCTGATCTTCACTTCAAGTACATTGAAGCCGCTGCTAAAACTGGACAAATTAAGGAGGTAGAGCGTGTGACTAGGGAATCAAACTTCTATGATGCTGAGAAGACAAAGAATTTTCTAATGGAGGCCAAACTTCCAGATGCGCGCCCATTGATTAATGTCTGTGATCGTTTTGGTTTTGTTCCAGATCTCACACATTATCTTTATACCAACAATATGCTTCGCTATATTGAAGGTTATGTACAAAAGGTCAATCCTGGAAATGCTCCTCTAGTTGTAGGACAGTTGTTAGATGATGAATGCCCCGAAGATTTCATTAAAGGCCTCATACTTTCAGTTCGTTCACTTCTGCCAGTTGAACCTTTAGTTGATGAGTGTGAGAAGAGGAATCGTCTCCGCTTGCTGACTCAGTTCTTGGAGCATCTTGTGAGTGAAGGAAGCCAGGATGTACATGTGCACAATGCCTTGGGAAAAATCATCATTGACAGCAACAACAATCCTGAGCATTTTCTCACAACCAATCCATATTATGATTCCCGTATTGTTGGCAAATATTGTGAGAAGCGAGATCCTACTCTTGCTGTTGTTGCTTACCGTAGAGGGCAATGTGACGATGAACTTGTTAATGTTACTAATAAAAATTCTTTGTTCAAACTCCAAGCGAGATATGTTGTGGAAAGGATGGATGCCGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTCAGAAGACAGTTAATTGATCAAGTGGTGTCCACCGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCAGCTGCCGTTAAAGCTTTTATGACTGCTGATCTTCCCCATGAGTTAATTGAGCTTCTTGAAAAGATTGTGCTACAAAATTCTGCTTTTAACGGGAACTTCAATCTGCAAAATTTGCTGATCCTCACTGCAATAAAGGCAGATCCTTCAAGAGTTATGGATTACATAAATAGGTTGGATAACTTTGATGGACCTGCAGTGGGAGAGGTGGCAGTGGAAGCACAACTATATGAAGAAGCATATACTATTTTcaagaaatttaatttgaatgttCAGGCTGTTAATGTTCTGCTAGATAACCTTAAGACTATTGATCGTGCTGTGGAGTTTGCTTTCCGGGTTGAAGAAGATGCTGTTTGGAGCCAGGTGGCAAAAGCACAACTGAGAGAAGGATTAGTAAGTGATGCAATTGAGTCGTTCATTCGCGCAGATGATTCAACTCATTTCTTAGAGGTTATAAAGGCTGCTGAAGATGGAGATGTATACCATGACCTGGTAAGGTATCTTCTCATGGTTAGGCAGAAGACCAGAGAGCCCAAGGTGGACAGTGAGCTCATTTATGCCTATGCTAAGATTGATCGGCTTGGCGAAATTGAAGAGTTTATACTCATGCCAAATGTTGCCAATTTACCAGTTGTTGGAGACCGCTTGTATGATGACACTCTATATGAGGCTgcaaaaattatatattcttttatatCTAACTGGGCTAAGTTAGCAGTCACACTGGTTAAGCTTCAACAGTTCCAGAGTGCTGTTGATGCCGCGAGGAAAGCAAACAGTTCAAAAACTTGGAAGGAAGTTTGTTTCGCCTGTGTTGATGCTGAGGAATTCCGCTTAGCACAAATTTGTGGTCTCAATGTCATCATTCAGGTGGATGATTTGGAGGAGGTTAGTGAATTTTATCAGAACAGGGGATGCTTCAATGAACTCATATCTCTTATGGAGAGTGGGCTAGGACTGGAGCGTGCACATATGGGTATCTTTACTGAATTGGGAGTTCTTTATGCAAGATATCGTCCCGAGAAACTAATGGAACACATCAAGTTGTTCTCAAGCCGTCTTAATATTCCAAAGGTTATTAGGGCATGTGATGAACAGCAACACTGGAAAGAACTTACATACTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACCACCGTAATGAATCATTCTCCTGAAGCATGGGAGCACATGCAATTCAAAGATATTATAGTTAAAGTTGCAAGTGTGGAACTCTACTATAAAGCTGTTCACTTCTACTTGCAAGAACATCCCGAAGTAATAAATGATCTTCTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATAATGCGGAAGGCTGGCCATCTCAAATTGATCAAGCCATACATGATCGCAGTCCAAAGTAATAATGTCACTGCTGTCAATGAAGCTCTAAATGAAATTTACGTTGAGGAAGAGGACTATGACAGACTTCGAGAATCAACAGATCTGCACGACAGCTTTGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAACTTCTTGAAATGAGGCGTGTTGCTGCATACATCTATAAGAAAGCAGGAAGATGGAAGCAATCCATTGCTTTGTCAAAGAAAGACCATCTTTACAAGGATTGTATGGAAACTTGCTCTCAATCTGGTGACCGTGAACTCTCAGAGGATTTGCTTGTCTACTTTATCGAGAAGGGGAAGAAAGAGTGTTTTGCATCATGTCTCTTTGTCTGCTATGATATTATACGGCCAGATGTTGCTCTTGAGTTGGCTTGGATGAATAACATGATTGATTTTGCTTTCCCTTATATCTTACAATTTATCCGAGAGTATTCAAGCAAGGTAGATGATCTCATCAAGGAAAAAATCGAGGCACAAAATGAGGAGAAAGCTAAGGAGAAGGAGGAGAAGGATGTAATTGCTCAGCAGAATATGTATGCCCAGTTGCTACCGCTAGCTTTGCCAGCACCACCAATGCCAGGAAtgggaggaggaggaggatatGCCCCTCCCCCACCACAACCGCCCATGGGTGGAATGGGGATGCCACCAATGCCTCCTTATGGCTTGCCTCCAATGGGTTACTGA 5112 0.4077 MAANAPITMKEALTLGSVGINPQFITFTHVTMESEKFICVRETAPSNSVVMIDMNMPMQPLRRPITADSALMNPNTRILALKAQVPGTTQDHLQVFNIETKTKMKSYQMNQQVVFWKWVTPKLLGIVTQSSVYHWSIEGDGEPVKVFDRTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFAVDQQRSQALEAHAASFASFRVTGNDKDSILICFASKTINAGQVTSKMHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDMETATAVYRNRISPDPIFLTAEASSVGGFYAVNRRGQVLLATVNEATIVPFVSSQLNNLELAVNLAKRGNLPGAEELVVQRFQELFAQTKYKEAAELAAESPRGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLFIRALQHYSELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDLHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRIVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDADLWEKVLNPENEFRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFNGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAYTIFKKFNLNVQAVNVLLDNLKTIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDSTHFLEVIKAAEDGDVYHDLVRYLLMVRQKTREPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPVVGDRLYDDTLYEAAKIIYSFISNWAKLAVTLVKLQQFQSAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEFYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSSRLNIPKVIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWEHMQFKDIIVKVASVELYYKAVHFYLQEHPEVINDLLNVIALRVDHTRVVDIMRKAGHLKLIKPYMIAVQSNNVTAVNEALNEIYVEEEDYDRLRESTDLHDSFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDHLYKDCMETCSQSGDRELSEDLLVYFIEKGKKECFASCLFVCYDIIRPDVALELAWMNNMIDFAFPYILQFIREYSSKVDDLIKEKIEAQNEEKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGGGGYAPPPPQPPMGGMGMPPMPPYGLPPMGY 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00874 1703 SMART CLH_2 846 985 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 699 841 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 992 1137 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 550 692 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 1436 1595 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 1287 1433 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SMART CLH_2 1141 1282 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 846 985 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SUPERFAMILY ARM repeat 1195 1530 IPR016024 -
Tsu03g00874 1703 Pfam Clathrin propeller repeat 153 193 IPR022365 -
Tsu03g00874 1703 Pfam Clathrin propeller repeat 19 55 IPR022365 -
Tsu03g00874 1703 Gene3D - 1541 1637 - -
Tsu03g00874 1703 SUPERFAMILY Clathrin heavy-chain terminal domain 4 342 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g00874 1703 Gene3D Tetratricopeptide repeat domain 1196 1535 IPR011990 GO:0005515
Tsu03g00874 1703 Gene3D Tetratricopeptide repeat domain 1056 1195 IPR011990 GO:0005515
Tsu03g00874 1703 Gene3D Tetratricopeptide repeat domain 901 1055 IPR011990 GO:0005515
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1436 1579 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SUPERFAMILY ARM repeat 900 1066 IPR016024 -
Tsu03g00874 1703 Pfam Clathrin-H-link 368 433 - -
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1287 1433 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Coils Coil 1616 1653 - -
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 699 841 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Gene3D - 1 376 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g00874 1703 MobiDBLite consensus disorder prediction 1671 1691 - -
Tsu03g00874 1703 SUPERFAMILY ARM repeat 456 792 IPR016024 -
Tsu03g00874 1703 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1702 - -
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 992 1137 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 SUPERFAMILY ARM repeat 1052 1194 IPR016024 -
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 550 696 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Coils Coil 1476 1496 - -
Tsu03g00874 1703 SUPERFAMILY ARM repeat 344 499 IPR016024 -
Tsu03g00874 1703 PIRSF CHC 2 1683 IPR016341 GO:0016192|GO:0032051|GO:0071439
Tsu03g00874 1703 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1141 1282 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 556 689 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 992 1130 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 700 839 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 1289 1430 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 849 975 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 1144 1280 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Region in Clathrin and VPS 1439 1578 IPR000547 GO:0006886|GO:0016192
Tsu03g00874 1703 Pfam Clathrin, heavy-chain linker 343 366 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g00874 1703 PANTHER CLATHRIN HEAVY CHAIN 1 1702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00874 Tsu-Chr3 8017485 8028401 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00874 03 8017485 8028401 Tsu03g00874 03 8017485 8028401 ECH
Tsu05g02865 05 38919396 38933927 Tsu03g00874 03 8017485 8028401 ECH