Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00496 ATGATTTTGAAGAATTTAAGAACCCCATTAATGGTGGCTGCTTCCTATGGGAGTATTGATGTTCTAAAGCTTATACTCTCATGTCCAGAGGCTGATGTTAATTTCTCCTGTGGTGCGGATAAAGGCACTGCTCTTCACTGTGCTGCTTCAGGGGGTTCTGTTAATGCCGTTGATGCTGTGAAACTGCTTTTATCAGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGAAACCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGGTGGTGTGAAATCAATTCTTGAAGAACTTCTCTCAGACAGTGCTTCTGATGGGTCTCTTGATGATTGTTCTCTTCCAGCTTCTGTGAATTCATCAAGTCCTCGTTCAGCTGCCCCTTTTTCATCAAATGAAAATGGGTCTCCATCCTCTCCTGGGGCTACTCCTAAGTTTACCGACACAGCTGCCAATTTTACATCAGAAAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCTACAGATGAATTCCGTATGTTTTCATTCAAGGTCCGTCCTTGTTCTCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCTTGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCACCCTGCTCAGTATAGGACAAGGCTCTGCAAAGATGGCACTAGCTGTAACCGAAGGGTGTGCTTTTTTGCTCACATAGCTGAAGAGCTTCGTCCGTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCTCGATCAACCGCTTCTGCTGCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTTTCCCTAGTTCACCATCATCAATCTCGTCCATGTCTCCATCTCCCTTTGCACAGCCATTATCTCCATCTGCTAATGGCATGTCTCACTCAAATAATGCTTGGCCACAGCCAAATGTGCCTGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTAGTGCCCGTGATATGCCACTTGATGACTTCAACAATATGTTGCAAGACTTTGATGGTCAACAGCACATACTAAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATTTCAGTGAGTCGATCTGGTCGGTCTAAAACACTAACTCCATCAAATCTtgaagatctattttgtgctgAAATTTCATCTTCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACACAAATCTGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGTTCTTTATCACCTATCAATACAAATGTCATGTCTCCTAAGAATGTAGAGCATCCTCTATTCCACCAGGCTTCATATGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAACCCCTTTCTCCAATGAGTTCTCGGTTGTCAGCATTTGCTCAGCGTGAGATGCAGCAGCAACAGATGCGGAGCCTTAGTTCAAGGGAACTTGGTGCTAACAATCCTGTCTCGGCTGTTGGTTCCCCTGGTAACTCCTGGTCCAAGTGGGGATCCCCTACTGGAAAAGCAGATTGGTCAGTGAATGGTGGACATGAGTTTGGACGTTCGCCAAGATCCACCTCTTTTGAGCATGGAAACAATGGGCAGGAGCCTGATCTATCCTGGGTTCATTCCCTTGTCAAGGAATCCCCGCCTGAGATAAAAGAGAAGCTGGCAGGTTCTGGTCCAATTGCATCTGCTGATCCAAATTCCAATCCTCAAGTGGAGTCTATTGATCATTCAGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 1941 0.4487 MILKNLRTPLMVAASYGSIDVLKLILSCPEADVNFSCGADKGTALHCAASGGSVNAVDAVKLLLSAGADINCVDANGNRPVDVIVVPPKLGGVKSILEELLSDSASDGSLDDCSLPASVNSSSPRSAAPFSSNENGSPSSPGATPKFTDTAANFTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIAEELRPLYVSTGSAVPSPRSTASAANVMDMAAAMSLFPSSPSSISSMSPSPFAQPLSPSANGMSHSNNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPLDDFNNMLQDFDGQQHILNDLSCFSQPRPGAISVSRSGRSKTLTPSNLEDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMSSRLSAFAQREMQQQQMRSLSSRELGANNPVSAVGSPGNSWSKWGSPTGKADWSVNGGHEFGRSPRSTSFEHGNNGQEPDLSWVHSLVKESPPEIKEKLAGSGPIASADPNSNPQVESIDHSVLGAWLEQMQLDQLVV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00496 646 Gene3D - 2 123 IPR036770 -
Tsu03g00496 646 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 3 644 - -
Tsu03g00496 646 ProSiteProfiles Ankyrin repeat profile. 40 75 IPR002110 GO:0005515
Tsu03g00496 646 SMART ANK_2a 5 35 IPR002110 GO:0005515
Tsu03g00496 646 SMART ANK_2a 40 72 IPR002110 GO:0005515
Tsu03g00496 646 MobiDBLite consensus disorder prediction 530 588 - -
Tsu03g00496 646 SUPERFAMILY Ankyrin repeat 5 111 IPR036770 -
Tsu03g00496 646 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 244 IPR000571 GO:0046872
Tsu03g00496 646 Gene3D - 219 282 - -
Tsu03g00496 646 MobiDBLite consensus disorder prediction 105 149 - -
Tsu03g00496 646 MobiDBLite consensus disorder prediction 569 588 - -
Tsu03g00496 646 SMART c3hfinal6 254 277 IPR000571 GO:0046872
Tsu03g00496 646 SMART c3hfinal6 219 245 IPR000571 GO:0046872
Tsu03g00496 646 ProSiteProfiles Ankyrin repeat region circular profile. 40 74 - -
Tsu03g00496 646 MobiDBLite consensus disorder prediction 530 557 - -
Tsu03g00496 646 Pfam Ankyrin repeats (3 copies) 7 74 IPR002110 GO:0005515
Tsu03g00496 646 PANTHER UNKEMPT FAMILY MEMBER 3 644 IPR045234 -
Tsu03g00496 646 MobiDBLite consensus disorder prediction 603 625 - -
Tsu03g00496 646 ProSiteProfiles Zinc finger C3H1-type profile. 224 246 IPR000571 GO:0046872
Tsu03g00496 646 MobiDBLite consensus disorder prediction 107 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00496 Tsu-Chr3 4205088 4207120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g00496 Ank_2 1.6e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00496 03 4205088 4207120 Tsu03g00496 03 4205088 4207120 ECH
Tsu08g01310 08 14878705 14882587 Tsu03g00496 03 4205088 4207120 PCT