Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00477 ATGATGGACTCAGAAGGAGAAGCCGGAGATAAGCCGATGAAGGCGTTGGGTAGCCAAATCTGCCAGATTTGTGGTGATAATATCGGTAGCGCTGTTAATGGTGATCCATTCATTGCTTGCGGTGTTTGTGCCTTCCCTGTCTGTAGGCCGTGCTACGAGTATGAAAGGAAAGATGGGAATCAGTCATGCCCCCAGTGCAAAACTCGGTATAATAAGCACAAAGGTAGTCCTCCGATTCTTGGTGATCGGGAAGAGGATGGTGATGCTGATAATGCTACCAATGACTTCAAGTACAATTCAGAAACCCAGACCCAAAAGCAAAAGATTGCAGAGCGCATGTTGAGCTGGCAAATGGCATATGGGCGAGGTGAGGAGGTTGATGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCGGCTAACTGGTGCACAAGAGGTATCTGGAGAATTATCTGCAGCCTCACCTGAGAGGTTGTCAATGGCATCTCCTGTAAATACTCGTGGAAAACGAGTTCACAATAATCCATCATATTCATCTGATCTTAATCAATCACCAAATATCAGGGTTATTGAACCGGGATTGGGCAATGTAGCATGGAAAGAAAGAGTAGATGGCTGGAAAATGAAACACGATAATAAGAATACTGCTCCAATGAGCACAGGCCAAGCTACTTCTGAAAGAGGAATAGGAGATATTGATGCCAGTACTGATGTGCTATTCGATGATTCCTTGTTGAATGACGAAGCTCGGCAACCTCTCTCCAGAAAGGTTTCTATTCCATCATCTAGGATAAATCCATACCGTATGGTTATTGTTCTGCGGCTTGTTATCCTCTGCATTTTCTTGCACTACCGAATTACAAATCCTGTACGCAATGCTTATGCATTGTGGTTAATATCAGTTATATGTGAAATTTGGTTTGCCTTTTCTTGGATATTGGATCAATTCCCTAAATGGCTTCCTGTGAACCGTGAAACATATCTTGACAGGCTTTCACTAAGATATGATCGGGAAGGGGAACCGTCACAGTTAGCAGCAGTTGACATTTTCGTCAGTACTGTTGATCCGTTAAAGGAGCCCCCACTTGTGACAGCCAATACTGTACTATCAATTCTTTCTGTTGACTACCCTGTGGATAAGGTCTCCTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAATCTCTTGCCGAGACATCAGAATTTGCAAGGAAATGGGTTCCTTTCGCCAAGAAATATGCCATTGAACCACGAGCACCTGAGTGGtacttttcaaagaaaattgacTACTTGAAAGATAAGGTCCAACCATCATTTGTCAAAGATCGTAGAGCAATGAAGAGAGAATATGAAGAATTCAAAATCCGTATCAATGGACTTGTTGCAAAAGCAGTAAAAGTTCCTGAAGAAGGTTGGGTGATGCAGGATGGTACTCCTTGGCCTGGAAACAACACCAGGGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGATACCGATGGTAACGAACTTCCGCGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTTCAACATCACAAGAAGGCCGGTGCCATGAATGCACTTGTTCGTGTATCAGCTGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCATTACATAAACAACAGCAAAGCCTTGAGAGAAGCTATGTGTTTTATGATGGATCCCAACCTTGGAAAAAATGTTTGCTATGTTCAGTTTCCACAGAGATTTGATGGTATTGATAGGAACGATCGATATGCCAATCGTAATACGGTTTTCTTTGATATAAATTTGCGAGGGTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACTGCTTTATATGGTTATGAACCTCCTATTAAACCCAAGCATAAAAAGGCTGGAATTATTTCTTCACTTTGCTGTGGAGATCGAAAAAATAGCTCAAAATCTAGCAAGAAAGGCTCAAAAAACAAGAAGTCTAGCAAGCATGCTGATCCAACTGTTCCCATCTTTAGTCTAGAGGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGATGATGAGAAATCACTACTCATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCCTCTACACTTATGGAAAATGGCGGTGTTCCTCAGTCTGCAACTCCAGAAACTCTCCTCAAGGAGGCAATTCATGTTATCAGTTGTGGTTACGAAGATAAATCAGAATGGGGACAGGAGATCGGATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTTAAGATGCATGCCCGTGGTTGGAGGTCTATATACTGCATGCCTAAACTTGCAGCATTTAAAGGTTCAGCTCCTATCAATCTTTCCGATCGTTTGAACCAAGTGCTTCGGTGGGCTTTAGGTTCAGTGGAAATTCTAGTTAGTCGACATTGTCCCATATGGTATGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGGTTCGCCTATATAAACACCACAATCTATCCAATCACATCCATTCCCCTTCTCATGTACTGTACCTTACCTGCTGTCTGTCTCTTGACTAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATGGTTCAtatctctctttctttctaTCTTCGCAACTGGTATCCTAGAGATGAGGTGGAGTGGTGTTGGAATTGATGAATGGTGGAGAAATGAACAATTTTGGGTTATTGGTGGTGTTTCAGCTCATCTTTTTGCTGTGTTCCAAGGTTTACTCAAAGTACTTGCTGGAATTGACACAAATTTCACTGTTACCTCAAAGGCATCAGACGAAGACGGAGACTCCGCAGAACTGTACATGTTTAAATGGACAACACTTCTCATTCCACCCACAACTCTTCTCATTATAAACTTAGTTGGAGTTGTTGCAGGAATCTCGTATGCCGTTAACAGTGGCTACCAATCATGGGGACCACTCTTCGGTAAACTTTTCTTCGCATTTTGGGTGATCATCCATCTTTACCCTTTCCTCAAAGGTCTCATGGGACGTCAGAACCGAACGCCGACCATTGTGGTTGTTTGGTCTATTCTTCTTGCTTCCATTTTTTCACTTTTGTGGGTTCGAATCGACCCTTTTACAACAAGAGTCACTGGTCCTGATTCTGAGGTGTGTGGAATCAACTGctag 3237 0.4198 MMDSEGEAGDKPMKALGSQICQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCPQCKTRYNKHKGSPPILGDREEDGDADNATNDFKYNSETQTQKQKIAERMLSWQMAYGRGEEVDAPNYDKEVSHNHIPRLTGAQEVSGELSAASPERLSMASPVNTRGKRVHNNPSYSSDLNQSPNIRVIEPGLGNVAWKERVDGWKMKHDNKNTAPMSTGQATSERGIGDIDASTDVLFDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLSLRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLAETSEFARKWVPFAKKYAIEPRAPEWYFSKKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAVKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKAGIISSLCCGDRKNSSKSSKKGSKNKKSSKHADPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGQEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILVSRHCPIWYGYSGRLKWLERFAYINTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDSEVCGINC 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00477 1078 MobiDBLite consensus disorder prediction 76 92 - -
Tsu03g00477 1078 SUPERFAMILY RING/U-box 6 89 - -
Tsu03g00477 1078 MobiDBLite consensus disorder prediction 661 683 - -
Tsu03g00477 1078 Pfam Zinc-binding RING-finger 11 87 IPR027934 -
Tsu03g00477 1078 PANTHER CELLULOSE SYNTHASE 3 1078 - -
Tsu03g00477 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 641 IPR029044 -
Tsu03g00477 1078 Pfam Cellulose synthase 350 1071 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu03g00477 1078 MobiDBLite consensus disorder prediction 74 104 - -
Tsu03g00477 1078 ProSiteProfiles Zinc finger RING-type profile. 21 67 IPR001841 -
Tsu03g00477 1078 MobiDBLite consensus disorder prediction 157 187 - -
Tsu03g00477 1078 CDD mRING-HC-C4C4_CesA_plant 19 69 - -
Tsu03g00477 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Tsu03g00477 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1078 - -
Tsu03g00477 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 891 IPR029044 -
Tsu03g00477 1078 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00477 Tsu-Chr3 4028948 4037441 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00477 03 4028948 4037441 Tsu03g00477 03 4028948 4037441 ECH
Tsu08g01313 08 14936170 14943684 Tsu03g00477 03 4028948 4037441 PCT