Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00466 ATGGCAGATTGGTCTCAGCTTCCAAAAGAACTTCTTCAACAAATATCCCAAAAACTCAACAACAGTGAACTCTACCTTCTTCGCTTTCGTTCCGTTTGTTCTTCCTGGCGCCGATCTTCCATCCCAAACTGCCATCACAACCACTTACCCTCCAAGATTCCGCATTTCCCCACCGAAGAAATCAGTTACGTTCGCCGTCTCTACAAACAAAGTATCTTTCTCATCAAACCACCTACAAATCTTCACCAACAAAAAACCCCTCTTAACCCTTGGTTAATCAGAATCGGTTCGGATGTAAACGGTAAAACAAACATCTTCCATCCCCTCTATCGTCACCACAAATATGATTGTTTAGATCTAGGTCATCATCTCATCGATTTCAACCAACTCTCTGTCCTCCATCTCAGACGCTTGTTCTACATCCACCGCACCAAATCACGTATAAATAGGAGGAATATGACTAGTGATTATGAAAAGGCTATTGTTGCTTCTACGTGTGAGGTTGGACAGCCTCTTGCTCTCGTCACATATGACAACAACTCTGAGCATCCGAAGATCTTCAGATGCCAGGACGATTCTTGGACAAGTATCCTGACCATGTCAGGCTCTTTATGGGGAGACATTTGTATTTTCAAAGGGCGGACTTGTGTGACAGACATAAACGGTAAGACTTTCATGAATGGACCGGAGGATTCCCGTGTTCACTTGCTGGCTAATCCGGTGATTGGTGGCAATGTTAAGTTCTTGGTGGAGACTGAATGTAAGACGTCGTTGTTGCTAGTGGATTGTCATGGAATTGATAATCAGGGTGATATTAAGGGTGCTGATAAGGATGTAAGGTTTGATGTATTTAGGCTTGATGAGAAGGAGAGGAAGTGGATCAAGTTGACCACTTTAGGAGAtatggttttatttttgggtgGAGATGGCGCATTCTCTGCTTCGGCTTCGGATTTGAGGGTTCCCAATGGAAATTGTGTGATCTTTAGTAGGAATTCTAACATAAAATATCCCGATGCCATACAACATGGACTCCGTATTTTTCACTTGGATCAAGGTCGGGTTTCATCTTTGTCTGATAATCCTGATTATATGAGGTTATTCTGGCCACCTCCAATGTGGATCCCCAAGCAGTATAACTATAACCAGAGGGGGATAGAGAGAAAGAGGAAGACTATGATTGACGATCTGAAAGTGGATGAGGTGGAGTTGTCAAATGCCGAGTTAGAGGAATTGCATGGGATTACGTCTAACATTTATTTCTTATCTCGTATTCATGCCAGCATATGTTGGCAGCAATCTCGCTCCCTTTGGCTAAAGGAAGGCGACGCGAATTATAAGTACTTTCACTCAATTCTAGCAAGTCATCGGTGGAGAAATGTTATTTCTTCAATTCGGGTGGATGGACTCACTATTGAGGGTGTGATCCCTATCTGTCGGGCTGTTGTTTCGCATTTTGCTTCTCACTTTAAGGCGAAAGAAACAAATGATGAACGTTACAATGAGAGGATGATGGAGACAAAACTTCAACAATTTCATGTCATGAAAAAAGCTCATCATCGATCTATCGCACCTTCGCATTCTCAAAATACGATTAATGTCAAGAACTATGGAGCCATATCTAACGATGGCCGAGTTGATAATGAGgCATTTGAAAAGGCATGGGATAAGGCATGTTCTAATGGAGCTATTCTTGTGGTACCTGAAAATAGTGTCTATCATCTAAAGCCTATAACATTTTCAGGTCCATGCCAACCCAATACTGCATTTAAGATTTATGGAACAATCAAAGCATGGCCTAAAAGAACAGCTTATGGAGAAGATAGAAAGCTATGGATTAAGTTTGATAATATCACAAATTTTAAAGTTGATGGTGGTGGAACCATAAATGGCAATGGGAAAATTTGGTGGAAGAATTCTTGCAAAGTCAATGAAAGCCTTGCTGTGACTTTCAATGAATGCAACAACTTGAAAGTGGTTAACCTAAGGTTCAAAAATGCACAACAAATGCATGTAAGGATTCAAAGTTGCAACAATGTTAGGGTTTCAAAGTTAATAATCAGAGCACCAGGACACAGCCCCAACACTGATGGAATTCATGTCACCAATTCACAAAATGTTATCATAAGCAACTGCATTATTGGGActgGTGATGATTGCATTTCAATAGTAAGTGGGTCCAAAAATATTCGAGCTACAGATATCACTTGTGGACCAGGACATGGGATAAGTATTGGAAGCTTAGGAAAAGGTAACTCAGAAGCTGAAGTGGCCAATGTGGAAGTGAATAGAGCCATACTAAAAGGAACCACTAATGGAGTTAGAATTAAGACTTGGCAgGGAGGTTCTGGCTATGCAAAAAACATCAAATTCCACAACATAGTTATGCGAAATGTGACAAATCCCATAATCATAGATCAAAACTATTGTGACCAAAAAGAGGAATGTCAAGAGCAGGACACAGCAGTGCAATTAAGCAACGTTGTGTACCAAAACATAAAAGGAACAAGTGCTTCAGAAGTGGCAATCAAACTTGAATGCAGTAAAGCTGTCCCATGCAAAGGAATTCACTTGCAAGATGTGATTTTAACACCAGAAGACAATGATTACACCATTGCAAAATGTGAAAATGTTAGATATTCAAAGAGTGGAATGTTAAATCCTAAATGCCATCCATGA 2679 0.402 MADWSQLPKELLQQISQKLNNSELYLLRFRSVCSSWRRSSIPNCHHNHLPSKIPHFPTEEISYVRRLYKQSIFLIKPPTNLHQQKTPLNPWLIRIGSDVNGKTNIFHPLYRHHKYDCLDLGHHLIDFNQLSVLHLRRLFYIHRTKSRINRRNMTSDYEKAIVASTCEVGQPLALVTYDNNSEHPKIFRCQDDSWTSILTMSGSLWGDICIFKGRTCVTDINGKTFMNGPEDSRVHLLANPVIGGNVKFLVETECKTSLLLVDCHGIDNQGDIKGADKDVRFDVFRLDEKERKWIKLTTLGDMVLFLGGDGAFSASASDLRVPNGNCVIFSRNSNIKYPDAIQHGLRIFHLDQGRVSSLSDNPDYMRLFWPPPMWIPKQYNYNQRGIERKRKTMIDDLKVDEVELSNAELEELHGITSNIYFLSRIHASICWQQSRSLWLKEGDANYKYFHSILASHRWRNVISSIRVDGLTIEGVIPICRAVVSHFASHFKAKETNDERYNERMMETKLQQFHVMKKAHHRSIAPSHSQNTINVKNYGAISNDGRVDNEAFEKAWDKACSNGAILVVPENSVYHLKPITFSGPCQPNTAFKIYGTIKAWPKRTAYGEDRKLWIKFDNITNFKVDGGGTINGNGKIWWKNSCKVNESLAVTFNECNNLKVVNLRFKNAQQMHVRIQSCNNVRVSKLIIRAPGHSPNTDGIHVTNSQNVIISNCIIGTGDDCISIVSGSKNIRATDITCGPGHGISIGSLGKGNSEAEVANVEVNRAILKGTTNGVRIKTWQGGSGYAKNIKFHNIVMRNVTNPIIIDQNYCDQKEECQEQDTAVQLSNVVYQNIKGTSASEVAIKLECSKAVPCKGIHLQDVILTPEDNDYTIAKCENVRYSKSGMLNPKCHP 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00466 892 Pfam F-box domain 4 38 IPR001810 GO:0005515
Tsu03g00466 892 Pfam Glycosyl hydrolases family 28 565 880 IPR000743 GO:0004650|GO:0005975
Tsu03g00466 892 PANTHER POLYGALACTURONASE 495 891 - -
Tsu03g00466 892 SUPERFAMILY F-box domain 3 43 IPR036047 GO:0005515
Tsu03g00466 892 Gene3D - 3 44 - -
Tsu03g00466 892 PANTHER - 495 891 - -
Tsu03g00466 892 ProSitePatterns Polygalacturonase active site. 734 747 IPR000743 GO:0004650|GO:0005975
Tsu03g00466 892 Gene3D - 515 890 IPR012334 -
Tsu03g00466 892 SUPERFAMILY Pectin lyase-like 521 891 IPR011050 -
Tsu03g00466 892 Pfam Protein of unknown function (DUF295) 296 332 IPR005174 -
Tsu03g00466 892 SMART pbh1 704 725 IPR006626 -
Tsu03g00466 892 SMART pbh1 757 778 IPR006626 -
Tsu03g00466 892 SMART pbh1 786 807 IPR006626 -
Tsu03g00466 892 SMART pbh1 677 703 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00466 Tsu-Chr3 3949235 3966281 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00466 03 3949235 3966281 Tsu03g00466 03 3949235 3966281 ECH
Tsu06g01046 06 9547591 9551672 Tsu03g00466 03 3949235 3966281 PCT
Tsu08g01369 08 15805505 15807106 Tsu03g00466 03 3949235 3966281 PCT