Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00301 ATGGAGATGTCTATACATCAAGACAATTCTGATATCAAGGGTATGGCAGGGTCAGGATCTTGCCTCTATGATCTCTTTTGCACTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGCTAACTGGTCCACAGGAAAGATTAGACAATCTGATGCGTCAAGCTGGGAACAAGTACTGCGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCAAGTCTCGGAGTATTTATTTGCATTAAGTGCTCTGGTATACACAGAAGCTTAGGAGTTCATATATCTAAGGTTCTGTCACTGAGTCTAGATGATTGGACTGACGAACAAGTTGATTTGTTGGTCCACTTGGGCGGAAATACAGTAATCAATAAGAAGTATGAAGCTTGTTTGCCAAGTCACATTAAAAAACCTAGACCGAATTCTTCCATTGAGGAGCGCTCTGATTATATTAGGAGAAAATATGagtttcaacaatttttggATACTGAGGAGAATTTGTATTGTCCCTTTATGCCATCCCACACAAGAAATTCTTCATCTGGTCACGCAAGAAATTCTTCATCTGGTCACGCAAGAACTTCTTCATCCGGTCAGAGCAGTTCCTACGGTCCTCCACTAGACAAAAAACGCTATGATAAACTAACAACTAAAAATCGTATCGGGCTATCATTTAAAAACAGTTGGGGAAAAAAAGAGTCTGAGAGTAAGAGTACAAAGAAGAGTAACTCATTGGCAGGTATGATTGAATTTGTTGGGTTGATTAAGGTCAATGTGGTAAAAGGCACCAACCTAGCTATCAGAGATTTAATGACTAGTGACCCATATGTCATCCTTTCTCTTGGTCACCAATCGGTGAAGACGCGTGTCATAAAGAACAATCTAAATCCAGTTTGGAATGAAAGTCTAATGCTATCGATTCCTGAGAGCATCCCTCCTCTTAAAGTGATTGTATATGACAAAGATTCATTCAAAAATGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCACTTGTTTCAGCAGCAAAAGCATATGAGAAATCTTCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGCTTGAAATTGAGCTTGAATGTCTTCCTCTTACTCAATAG 1236 0.3892 MEMSIHQDNSDIKGMAGSGSCLYDLFCTETPSLNSQSQRERWMLTGPQERLDNLMRQAGNKYCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLSLDDWTDEQVDLLVHLGGNTVINKKYEACLPSHIKKPRPNSSIEERSDYIRRKYEFQQFLDTEENLYCPFMPSHTRNSSSGHARNSSSGHARTSSSGQSSSYGPPLDKKRYDKLTTKNRIGLSFKNSWGKKESESKSTKKSNSLAGMIEFVGLIKVNVVKGTNLAIRDLMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPESIPPLKVIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQHVERGVLEIELECLPLTQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00301 411 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
Tsu03g00301 411 CDD C2_ArfGAP 254 398 - -
Tsu03g00301 411 Gene3D C2 domain 254 408 IPR035892 -
Tsu03g00301 411 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Tsu03g00301 411 SMART C2_3c 256 351 IPR000008 -
Tsu03g00301 411 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Tsu03g00301 411 Pfam C2 domain 256 346 IPR000008 -
Tsu03g00301 411 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Tsu03g00301 411 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 411 IPR044518 GO:0005096|GO:0005543
Tsu03g00301 411 MobiDBLite consensus disorder prediction 179 213 - -
Tsu03g00301 411 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Tsu03g00301 411 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Tsu03g00301 411 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Tsu03g00301 411 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 346 IPR035892 -
Tsu03g00301 411 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Tsu03g00301 411 MobiDBLite consensus disorder prediction 179 206 - -
Tsu03g00301 411 ProSiteProfiles C2 domain profile. 238 353 IPR000008 -
Tsu03g00301 411 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 3 411 - -
Tsu03g00301 411 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00301 Tsu-Chr3 2471710 2475549 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00301 03 2471710 2475549 Tsu08g01347 08 15449524 15452219 PCT