Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00300 ATGGTTGGGCATGCAAAAAAGAAGAATTTAAAGGAGATGTTCTTTGGTTACACTGACTCACCAGTCACCTCTTTGTTACTCATTACCCATCTCCTCTCTTCCCGCCTCTCTCCACGCGCCGCCGTTCTCTCGTATCCGCCTCTTTTTCTTTCAACCGAGGTTATTTCTACAATCCCTGCAACACACTCAAAAGGGATTATTATTTGTGAGGAAAtgtcgtcatcatcatcagtTGAATCACTTGTTCTTAAACTCCATGAGATATCAGCTGTCAAATTCGGCAACTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATTGACCTACGTCTCATTATATCTTATCCTTCTCTTCTCCAGCAAATCTCTCAGACCCTAATTTCATCCGTCTCTTCCACTTCCTTTGAACTTGTATGTGGTGTCCCTTACACTGCCTTACCCATTGCCACATGTGTGTCTCTTGCTCAAAACCTCCCCATGGTCATGCGTCGTAAGGAAGTCAAAGACTACGGCACTGCTAAAGCCATTGAAGGTGATTTCAAGCCTGGCCAAAGTTGCTTAATCATTGAGGATTTGGTTACCAGTGGAACTTCAGTTTTGGAAACAGCTGCGCCACTGCGTTCTGTGGGATTGAAGATCACTGATGCTGTTGTCTTGATCGATAGAGAGCAAGGTGGGCGAGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTgaaatggtgaaaattttgAGGGATCATGGAAGACTTGATGACGAGATGGTCGGGGTCGTCACGAGATTCTTAGATGAGAACCGGAAGGTTGCAGCTTTGGGAAAGGTCGAGAAGCCGATAACTAAGGTCAAGTCTTTGTCATTTGGGGAGAGGGCTAAGCTTTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGAAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTCAAATTGCTGAGAAGGTTGGACCTGAAATATGCTTGCTGAAGACTCATGTGGATATTTTGCCAGATTTTACTCCTGATTTTGGCTCTAAGCTTCTCTCGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTGACCATGCAATATGAAGGAGGGATCTTTCACATATTGGATTGGGCTCACATAGTAAATGCTCACATTATCTCTGGCCCTGGAATTGTGGACGGACTAAAATTGAAGGGTTTGCCACGAGGCAGGGGACTATTACTGCTTGCTGAAATGAGTTCAGCCGGCAACCTTGCAAAGGGAGATTATACCGCTGCTGCATTGAAAATTGCTGAGGATCATTCCGACTTTGTAATTGGCTTCATCTCTGTTAATCCtgcatcatggccaggggcacCCATAAATCCTTCTTTCATTCAGGCAACTCCTGGAGTTCAAATGGTGACTGGTGGCGATGGATTAGGACAGCAATATAACACTCCACATTCTGTCGTTCATGATAGGGGAAGTGACATTATCATTGTGGGACGTGGTATCATCAAGGCCGCAAATCCTGCTGAGGCAGCTCATGAATACCGTCAACAAGGATGGAATGCATATTTGGCCAAATCTGCTTAA 1650 0.4255 MVGHAKKKNLKEMFFGYTDSPVTSLLLITHLLSSRLSPRAAVLSYPPLFLSTEVISTIPATHSKGIIICEEMSSSSSVESLVLKLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLQQISQTLISSVSSTSFELVCGVPYTALPIATCVSLAQNLPMVMRRKEVKDYGTAKAIEGDFKPGQSCLIIEDLVTSGTSVLETAAPLRSVGLKITDAVVLIDREQGGRENLEENGIKLHAIIKLTEMVKILRDHGRLDDEMVGVVTRFLDENRKVAALGKVEKPITKVKSLSFGERAKLSKNPTGKRLFEIMAEKKSNLCLAADVGTAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTAAALKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDGLGQQYNTPHSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRQQGWNAYLAKSA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00300 549 Gene3D Aldolase class I 288 548 IPR013785 -
Tsu03g00300 549 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 78 548 - -
Tsu03g00300 549 SUPERFAMILY Ribulose-phoshate binding barrel 291 545 IPR011060 -
Tsu03g00300 549 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 78 548 - -
Tsu03g00300 549 Gene3D - 68 280 IPR029057 -
Tsu03g00300 549 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 319 537 IPR014732 GO:0004590|GO:0044205
Tsu03g00300 549 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 317 536 IPR001754 GO:0004590|GO:0006207
Tsu03g00300 549 TIGRFAM pyrE: orotate phosphoribosyltransferase 85 246 IPR004467 GO:0004588
Tsu03g00300 549 Pfam Phosphoribosyl transferase domain 134 229 IPR000836 -
Tsu03g00300 549 SUPERFAMILY PRTase-like 78 262 IPR029057 -
Tsu03g00300 549 CDD PRTases_typeI 136 243 IPR000836 -
Tsu03g00300 549 CDD OMP_decarboxylase_like 319 536 - -
Tsu03g00300 549 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 374 387 IPR018089 GO:0004590|GO:0006207
Tsu03g00300 549 SMART OMPdecase_2 318 536 IPR001754 GO:0004590|GO:0006207
Tsu03g00300 549 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 302 IPR023031 GO:0004588|GO:0006221
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00300 Tsu-Chr3 2466213 2471070 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00300 03 2466213 2471070 Tsu08g01346 08 15440744 15443487 PCT