Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00299 ATGACGACGGTGATGGAAaaccaaaaacaacaacaacaacaagaaggTAACAAGGGACAGTTGAAAAAGTGTCAAAGGAAAAAAACCTCTTCTTCGTGTTATTCTCGTATCAATAATCTCGATGACGGTTGTCTTATGCACATCTTTAGTTTCCTTCCACCTATTCCAGATCGCTTTAATACCGCCCTCGTTTGCCACAGATGGAATTACTTGGCATGTCATCCTCGCCTGTGGCTTCGGGTAGATCGATCGGTTAAAGACTTATCTGAACCTGGTGTTTTCCCCAACATTGAATCTGCTGTTTCTGCTTCAAGACCAGGTGATACCATATTAATAGCTGCTGGTGGAATTCATCGCGTCTCaaacattcaaataaaaaaaccacTATGCTTGATTGGTGCAGGTGAAATTCCAGATGACACGATGCTCACTTGTGCGCGAGGCTCGGACAGTGCACTCGAGTTCCTTTCCACCTGCAAATTAGCAAACTTAACCGTCAAAGCTGAGCTCGGTTGTTGCTTGCTACATCGAAGTGGAAGGCTGACTATAGACGGATGCGTACTACAATGCGAGTCTAATCCCCTTGATTTTCTCTCATGTCCAATTGTGAGTACTGCCAATAGCAGTGAGGTGGTTCCCTCACACACCAAGAGCAACAACAGCAACGGGGTGTTTGTTTCTCAAACTCGCATAGAAGGAGGTGCGAAAGCCGTTTTGACAAGTGGAGATTTGGCGTTGCAACGAGTCAGAGTGGTTTATGCAAGAACTTCCCTTCTTTTCTGGTTTGATGTAGAGCAAATACTCTCTGTGTTTCATTCTCTCTCAAATGAACTTTTGATCAAACCATCATTgcagGGGCTGGTGGTGGTTGGACATACAAATATGGCATGTAGTAATCCATTCTTCGATGATATGCGGAGCAGATCTGGGGTTGACCCTCCTCAAACTGAAGATTTAACTGAAATTTCTGAACTCGTAAATGATCCTTTACAGACTGTTGTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATTCACCAGTGCTCGAATGGTCACACTTTATGTTCTGGTTGCAAACCAAGAGTCCATGACCGGTGCCCTACTTGCCGGCATGAACTCGGCAATATTAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGTATAGGCATATACCCATATTACAGCAAGCTAAAACACGAGTCTCAATGTGTGTTTAGACCTTATAACTGTCCATATGCTGGTTCAGAATGTTCTGTCGTCGGTGATATACGTTACCTGGTGGCACACTTGAAAGATGATCATAAAGTGGACATGCATAGTGGTTGCACTTTTAATCATCGCTATGTCAAATCGAATCCACACGAAGTCGAAAATGCCACGTGGATGCTAACGGTTTTTAGTTGCTTCGGTCAGTATTTTTGTCTGCATTTTGAAGCATTTCAACTGGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTCATGGGCGATGATAATGAGGCAAAGAACTATACTTATAGTCTTGAGGTAGGTGGAAATGGGAGGAAGATGACCTGGCAAGGTGTGCCTAGAAGCATTAGGGAAAGCCACCGCAAGGTTCGCGACAGTTTTGACGGTCTCATCATTCAAAGGAACATGGCTCTCTTCTTTTCCGGGGGTGACAGGAAGGAATTGAAACTACGAGTTACCGGAAGGATTTGGAAAGAACAATGA 1797 0.429 MTTVMENQKQQQQQEGNKGQLKKCQRKKTSSSCYSRINNLDDGCLMHIFSFLPPIPDRFNTALVCHRWNYLACHPRLWLRVDRSVKDLSEPGVFPNIESAVSASRPGDTILIAAGGIHRVSNIQIKKPLCLIGAGEIPDDTMLTCARGSDSALEFLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCESNPLDFLSCPIVSTANSSEVVPSHTKSNNSNGVFVSQTRIEGGAKAVLTSGDLALQRVRVVYARTSLLFWFDVEQILSVFHSLSNELLIKPSLQGLVVVGHTNMACSNPFFDDMRSRSGVDPPQTEDLTEISELVNDPLQTVVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECSVVGDIRYLVAHLKDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMTWQGVPRSIRESHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00299 598 Pfam Seven in absentia protein family 392 591 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu03g00299 598 MobiDBLite consensus disorder prediction 1 23 - -
Tsu03g00299 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 457 IPR013083 -
Tsu03g00299 598 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 301 598 - -
Tsu03g00299 598 ProSiteProfiles Zinc finger RING-type profile. 350 386 IPR001841 -
Tsu03g00299 598 SUPERFAMILY TRAF domain-like 403 595 - -
Tsu03g00299 598 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 301 598 - -
Tsu03g00299 598 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g00299 598 Gene3D - 38 78 - -
Tsu03g00299 598 SUPERFAMILY RING/U-box 344 391 - -
Tsu03g00299 598 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 458 591 IPR008974 GO:0005515
Tsu03g00299 598 CDD RING-HC_SIAHs 348 386 - -
Tsu03g00299 598 SUPERFAMILY F-box domain 21 96 IPR036047 GO:0005515
Tsu03g00299 598 SUPERFAMILY Pectin lyase-like 91 231 IPR011050 -
Tsu03g00299 598 SMART fbox_2 40 81 IPR001810 GO:0005515
Tsu03g00299 598 ProSiteProfiles Zinc finger SIAH-type profile. 403 463 IPR013010 GO:0008270
Tsu03g00299 598 Pfam F-box-like 44 82 IPR001810 GO:0005515
Tsu03g00299 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 401 IPR013083 -
Tsu03g00299 598 CDD Sina 464 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00299 Tsu-Chr3 2453675 2464636 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00299 03 2453675 2464636 Tsu08g01344 08 15432513 15436922 PCT