Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00223 ATGGGGACCGAAAAGCTTAGATCTTGTGCAAACTTCCTAGAGAACTCTATGCCCTACTTTGCAATGATCCTTTTACAATTTGGCTATGCAGGCATGAATGTTATAGCCAAGCTTTCTCTCAACGGAGGCATGAGTCACTATGTCCTTGTTGTTTACCGCCACGCTTTTGCAACAATTGCTATTGCTCCATTTGCCATTATCTTTGAAAGGAAGGCTCAGCCAAAGATTACATTTCCCATTTTCATACAAATTTTTCTCCTAGCACTTCTTGGGCCAGTGATAGATCAAAACTTATACTATGCTGGGTTGAAATTAACATCCCCAACCTTCTCATGTGCAATCAGCAATATGCTTCCAGCAATGACATTTGTGATTGCGGTTTTATGCCGGATGGAAAAGATCAACATGAAGAAGTTGAGATGCCAAGCAAAGATAGTTGGAACAATGTTAACTGTGGCTGGAGCAATGTTGATGACCTTGTACAAAGGTCCTATTATGCAATTGTTTTGGACTAAAGATACACTTCATAGTAAAAACAATACAACAAACTACACAACATCTTCAAGCAAGGATACTTGGCTCTTAGGTTCCACTTTACTAATTATTTCAACTTTGGCATGGGCATCCCTCTTTGTGTTACAAGCTAAAGCTATAGAAACATACAAGAATCATCAACTTACACTCACATCACTTATATGTTTCTTTGGTACGCTTCTAGCTTTTCTTACCACTTTGGTTATGGAACACAAAGCTTCTGTGTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCCTATGGGGGGATTGTTGCATCAAGTATATCATATTACGTACAAGGATTggtaataaaaaagaaagggCCTGTTTTTGCAACTTCATTTAGTCCTTTGATGATGATCATTGTAGCCATCATGGGCTCCTTCTTCCTTGCAGAGCATATTTTTCTTGGAAGTGCAATTGGTTCAATATTGGTTGTGACAGGCTTATATTCTGTTTTGTGGGGAAAACACAAAGAACAAGTGGAAAATAAAGTGTCGCCAGATGATAAACCGTTGCCTACAAAGAATGCTCGGTTAAATGGAAATATAGGGAAACTTTCAGAATCCTTTGATCAACTTAGTGAAGCAAAATCATTTCAGAAAGTAGAACCAAACATTTCAGTAGTTATTATTAATTGTAACATAAGTTAA 1194 0.371 MGTEKLRSCANFLENSMPYFAMILLQFGYAGMNVIAKLSLNGGMSHYVLVVYRHAFATIAIAPFAIIFERKAQPKITFPIFIQIFLLALLGPVIDQNLYYAGLKLTSPTFSCAISNMLPAMTFVIAVLCRMEKINMKKLRCQAKIVGTMLTVAGAMLMTLYKGPIMQLFWTKDTLHSKNNTTNYTTSSSKDTWLLGSTLLIISTLAWASLFVLQAKAIETYKNHQLTLTSLICFFGTLLAFLTTLVMEHKASVWTIGWDMNLLASAYGGIVASSISYYVQGLVIKKKGPVFATSFSPLMMIIVAIMGSFFLAEHIFLGSAIGSILVVTGLYSVLWGKHKEQVENKVSPDDKPLPTKNARLNGNIGKLSESFDQLSEAKSFQKVEPNISVVIINCNIS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00223 397 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020|GO:0016021
Tsu03g00223 397 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020|GO:0016021
Tsu03g00223 397 PANTHER WAT1-RELATED PROTEIN 12 373 IPR030184 GO:0016021|GO:0022857
Tsu03g00223 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 339 - -
Tsu03g00223 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Tsu03g00223 397 PANTHER WAT1-RELATED PROTEIN 12 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00223 Tsu-Chr3 1771718 1776804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00223 1 369 Nodulin-like Gene Family AT5G07050 65.526 2.03e-176 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00223 03 1771718 1776804 Tsu08g01473 08 17009962 17013558 PCT