Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00191 ATGCTCTATCTATGGTTACTTACCATCAAATTGATAAGCTTTTTTCCCTTTGCTTATACAGAACCACTTGATTATAGATATGCTTGTGTAGACAAATCTTCTGTTCCTCCTTCAAGCACATACCAAACCAACCTCAACAAATTGTTATCAGTATTAACATCAGATTCTGCTATCAGCAATGGTTTCGGTAACAGAACTTCAGGTAACGATCAAAACGATATGGTTTATGGACTATACTTCTGTCGTGGGGATGCGAATGCAACCCTTTGCAATTCATGCATTCAATATTCTAGCAGATTGATAAAGCAGGTGTGCCCTAATAATGCATCAGCTATTTTTTGGTGTCCTTTTTGTCTTCTGAGGTACTCAAACAAGAATTTCTTCGGCAAATTAGCTATAAGACCGAGGATTCCTATGTTTGATGCAACACAGAATTTTACTAGTGTTGGTGAATTTGATAGTGATGCAAGGATTTTGATGAATGGTTTGATACAAATTGCATCACAAACACCTTTAATGTTTGGTACACATATGTTTAACATAAATGGTACTCAAAGAAGATATGGTTGGGTGCAATGCAACCGAGATATTACTAGAGAGGAATGTAGAACTTGTTTAAGTAATATGCTCGACGATGTTGAAAGTTGTTGTATGGAGAAGCGAGTGTGGCGTGTATTTTCACCGAGTTGTGTTATTATGTATGAAACTCAGCCATTCCTTTTGAAAGGTACACAGAATGACGCGCCAGGGACTAAAAAAGCCAAAGAAAAGGATGAAACAAGGTCATTGATTCTAATAATAATCATTGTTGTAACTGCAACGGTAGCGGTAGCGTTATTGTCTTTCAGCACATACTACATCAGGCGCTTGGAACGGAAAAAAGATGAAAAAGAGATGCAAATCCTTGATGCAATGTTTTCTCAAGATCAGAGTAACGATGAGGAGAATGTGAATACTGACCTACCTATGATGCCTCTAAGTACTATTCTAAAAAGTACTAATAATTTTTCTGATAATTATAAATTGGGGGAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTAGCAGATGGAAGAGAAATTGCTGTTAAAAGACTTTCAAAAACTTCGGTTCAAGGTGTGGAGGAATTCAAGAATGAAGTAATGTTGATTGCCAAATTGCAGCATCGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAAGGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCCAGCCTTGATTTCCAGCTACGCGATACTGTAAAGGGTGCTCAGTTGGACTGGAAACAACGACTAAACATTATTAATGGTATTGCTAAAGGGCTTCTGTATCTTCATGAGGACTCTAGACTCAGGGTTATTCATAGAGACTTGAAAGCTAGCAATATACTGTTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGACTAGCAAGATCATTTGGAGGAGACCATGGGGAAGCAAATACAGTTAGAGTTGTCGGAACTTATGGATACATGGCTCCAGAATATGTTATCGAAGGCTTGTTTTCCATAAAGTCAGATGTGTTCAGCTTTGGTGTTCTTTTGTTGGAGATCATCAGTGGAAaaaggaacaacaaaaaattctaCCTTTCAGAGCATGGCCAAAGCCTTCTCACATATGCATGGAACTTCTGGACTGAAGGAAAAGGTTTAGAATTGGTGGATCCGTTGATAGAAAATTCATATGTGCCTAGTGAAGTTTTGAAGTGTATACAGATTGGCCTATTGTGTGTACAAGATAATGCAGCTGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGGAAGTGACAACATGGCTCTTCCCAGCCCTATATGTCCATCTTTTTCTGTTGCAAGGACTACAAGTAAAATTGAAAGAGGGACTTCATCAAATGCTTCTACCTCTGTCACTGTCAATGAAATAACCCTATCTGAGATGATACCTAGATGA 1974 0.3774 MLYLWLLTIKLISFFPFAYTEPLDYRYACVDKSSVPPSSTYQTNLNKLLSVLTSDSAISNGFGNRTSGNDQNDMVYGLYFCRGDANATLCNSCIQYSSRLIKQVCPNNASAIFWCPFCLLRYSNKNFFGKLAIRPRIPMFDATQNFTSVGEFDSDARILMNGLIQIASQTPLMFGTHMFNINGTQRRYGWVQCNRDITREECRTCLSNMLDDVESCCMEKRVWRVFSPSCVIMYETQPFLLKGTQNDAPGTKKAKEKDETRSLILIIIIVVTATVAVALLSFSTYYIRRLERKKDEKEMQILDAMFSQDQSNDEENVNTDLPMMPLSTILKSTNNFSDNYKLGEGGFGTVYKGVLADGREIAVKRLSKTSVQGVEEFKNEVMLIAKLQHRNLVRLLACCIEQKEKLLIYEYLPNSSLDFQLRDTVKGAQLDWKQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARSFGGDHGEANTVRVVGTYGYMAPEYVIEGLFSIKSDVFSFGVLLLEIISGKRNNKKFYLSEHGQSLLTYAWNFWTEGKGLELVDPLIENSYVPSEVLKCIQIGLLCVQDNAADRPTMSSVVHMLGSDNMALPSPICPSFSVARTTSKIERGTSSNASTSVTVNEITLSEMIPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00191 657 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Tsu03g00191 657 CDD STKc_IRAK 342 608 - -
Tsu03g00191 657 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00191 657 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Tsu03g00191 657 Pfam Protein tyrosine and serine/threonine kinase 340 608 IPR001245 GO:0004672|GO:0006468
Tsu03g00191 657 PANTHER PROTEIN KINASE DOMAIN 26 654 - -
Tsu03g00191 657 SMART serkin_6 336 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00191 657 Gene3D - 138 239 IPR038408 -
Tsu03g00191 657 Gene3D - 23 127 IPR038408 -
Tsu03g00191 657 Pfam Salt stress response/antifungal 34 124 IPR002902 -
Tsu03g00191 657 Pfam Salt stress response/antifungal 144 236 IPR002902 -
Tsu03g00191 657 ProSiteProfiles Gnk2-homologous domain profile. 23 127 IPR002902 -
Tsu03g00191 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Tsu03g00191 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 654 - -
Tsu03g00191 657 SUPERFAMILY Protein kinase-like (PK-like) 319 628 IPR011009 -
Tsu03g00191 657 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Tsu03g00191 657 ProSiteProfiles Gnk2-homologous domain profile. 134 239 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00191 Tsu-Chr3 1542105 1547315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00191 8 652 Receptor kinase-like Gene Family AT4G05200 40.359 1.30e-162 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00191 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00191 03 1542105 1547315 Tsu08g01487 08 17141357 17147344 PCT