Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00188 atggcaACAAAATTCATACTCATAATTTCCATCCTTAAATTTCTTAGCTTCATGACCCTTTTCACAAGATCATTTTCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACAGAACAATCTCTTACAGCTACATACAAATCAAACCTTAACCAAGTTCTCTCATTGCTTTCTTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGTATAGGTGACAACACAGTTGATGGTGTCTATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTtcattttgtcaattttgtgtCTCTACTGCTGCCTCAGATATTCTTCAACACTGTCCTAATAGAGCCTCAGCTACTATATGGTACAACTTTTGCATTCTCAGATATTCCAATCATAATTTCTTTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAACACAAGTAATCCACAAGAACTTGAGAAAGCTGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTttggatacaaaaaaattatatgcaatGGGTGAATTCAATTTGAGTACTAATAAGAAAAGATATGGATTGGTGCAGTGTGGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGCTATGTTAGATAAAGTTCCTAAATGTTGTGGGACAAAGATTGCTTGGCAAGTTGTTGCTCCaagttgtttgataaaatatgaTGAAGTTATGTTCTATCAACTTATTTCTCAAACATCAACTCCTTTGTcagGGAAAGGAGGTTCAAAGAAATCAAATACTTTGATCATTACCATAGTCATTGTGTTGGTGGTGGCAGTTGCTCTCATGAGTTGTTGTATTTACTTCATATGGAGGCgtaataataattcaaataaagATGGACTAGAATCAGAGACAATTCCCATATCTCTTCATGACCGTAAAGGAAACGATTCAATAAATTCCGACCTTCCAATAATTCCTTTAAGTTGGATTAGACAGAGTACTAATAACTTTTCCGAGTTATGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTATAAgGGTAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCTATAACATCTGGTCAAGGTTCACAAGAGTTCAAAAATGAAGTGATCTTTATAGCTAAATTGCAACATAGAAATCTTGTGAAACTTTTGGGTTGCTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAATACATGCCAAACTCTAGCCTTGACTTTCATCTTTTTGGTACAAatgatgaaaaaagaaaacttcTAGATTGGAAGTTAAGATTGAACATTATTAATGGAATTGCAAAAGGACTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTACTAGATAAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGACCAATGTCAAGAAAATACAAGAAGAGTTGTGGGCACATATGGATACATGTCGCCAGAGTATGCCATGGAGGGGTTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTGTTAGAGATAATTTGTGGAAAAAGAAATAGTGGATTTTATCTCGGAGATCATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGAAAAAGTTTGGAACTTTTAGATCCAACATTGAAAAAGACATACATAGACAATGAAGTTGTGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAGTTGATAGACCAACCATGTCCAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCCAATCCTAATAATCCTGCATTTTCAGTTGGAAGAAAAGAATCAACTTCAAAATCTTCCAATGATCCTTCTGCTAATGAAGTTACAATATCAAATATTTTCCCTAGGTAG 1968 0.3343 MATKFILIISILKFLSFMTLFTRSFSQSPNYVGDDCKNSTEQSLTATYKSNLNQVLSLLSSDAIVSKGYNHTSIGDNTVDGVYGLYDCRGDVVGSFCQFCVSTAASDILQHCPNRASATIWYNFCILRYSNHNFFGKLTTDPSWNKSGSENTSNPQELEKAEDNMQSLIKEATLDTKKLYAMGEFNLSTNKKRYGLVQCGRDLNDKQCNQCLEAMLDKVPKCCGTKIAWQVVAPSCLIKYDEVMFYQLISQTSTPLSGKGGSKKSNTLIITIVIVLVVAVALMSCCIYFIWRRNNNSNKDGLESETIPISLHDRKGNDSINSDLPIIPLSWIRQSTNNFSELCKLGEGGFGPVYKGNLVDGTEVAIKRLSITSGQGSQEFKNEVIFIAKLQHRNLVKLLGCCIEDNEKLLVYEYMPNSSLDFHLFGTNDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDKEMNPKISDFGLARAFEKDQCQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLGDHGQSLLIYSWNLWYEGKSLELLDPTLKKTYIDNEVVRCIHIGLLCVQEDAVDRPTMSNVVVMLASDTMALPNPNNPAFSVGRKESTSKSSNDPSANEVTISNIFPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00188 655 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Tsu03g00188 655 Pfam Salt stress response/antifungal 160 241 IPR002902 -
Tsu03g00188 655 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Tsu03g00188 655 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Tsu03g00188 655 Pfam Protein tyrosine and serine/threonine kinase 343 610 IPR001245 GO:0004672|GO:0006468
Tsu03g00188 655 CDD STKc_IRAK 345 612 - -
Tsu03g00188 655 ProSiteProfiles Protein kinase domain profile. 339 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00188 655 MobiDBLite consensus disorder prediction 623 655 - -
Tsu03g00188 655 Pfam Domain of unknown function (DUF3403) 614 655 IPR021820 GO:0004674
Tsu03g00188 655 SMART serkin_6 339 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00188 655 Gene3D Transferase(Phosphotransferase) domain 1 415 621 - -
Tsu03g00188 655 Coils Coil 158 178 - -
Tsu03g00188 655 Gene3D Phosphorylase Kinase; domain 1 306 414 - -
Tsu03g00188 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 652 - -
Tsu03g00188 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Tsu03g00188 655 PANTHER PROTEIN KINASE DOMAIN 21 652 - -
Tsu03g00188 655 SUPERFAMILY Protein kinase-like (PK-like) 321 643 IPR011009 -
Tsu03g00188 655 Gene3D - 30 134 IPR038408 -
Tsu03g00188 655 Gene3D - 143 245 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00188 Tsu-Chr3 1523733 1530290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00188 1 644 Receptor kinase-like Gene Family AT4G05200 43.308 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00188 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01488 08 17153948 17158004 Tsu03g00188 03 1523733 1530290 PCT