Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00176 ATGGACGAAGGGTTAGGTCAAAACTCAGTTCCTCCTCCCGGTTCTATTGACAAGTCTAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTCTTTTCGATGAATCCTCAAGCTCCACCTTCAGGACAATATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGCGGACCTCATGACACTTCAACCACTGGGGTGAAACGTAGGGCGATGCCAACTCCGCTTCGAGCATTTCGGAGTCCTCTAGGAGAGGACGAGGATTTCAATGACGATTTTAGTAATACAGGAAATGAAGCATCGCGTTCGAGCCGGGTCAAACCGAAGAAGACCAAGATATATAGTGATCTGCATGTTGATTTGAGTGGTTTAGTTGGTATAAACCCGGCACATAGAGACGATGGTAACCGTGAAGTGGTTAATATTGTACTCATGACATTTGATGCACTAAGAAGAAGGCTAAGCCAACTTGTAGATGCCAAGGAATTGAGCACGGGTTTGGTCAAGCGTGCGGATTTAAAAGTTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACGTGACGAAGAGGGTCGGAGCAGTGCCTGGAGTTGAGATTGGGGACATTTTCTTTTTTCGAATGGAATTATGTGTTGTTGGTTTGCACGCTCAGTCCATGGGGGGAATTGATGCCTTGCATATCACGGGTGCCCGTGAGGAAGAAACTTTGGCTGTAAGCATTGTTTCTTCGGGAGAATATGATGATGAAGCTGAGGATGGTGATGTTATAATTTATACTGGTCAGGGTGGGAAtttcaacaagaaagataagcATGTGTCAGATCAGAAGCTTCATAGGGGCAATCTTGCTTTGGATAGAAGTTCGCGAACACACAATGAAATAAGAGTCATCCGAGGCATAAAAGATGCTGTGAATCCGAACTCAAAAATCTACGTCTATGATGGTCTATATAAAATTCAAGATTCATGGGTTGAAAAAGCCAAAGGCGGTGGTAGCTTGCTTAAGTATAAGTTGATAAGAGTGCCTGGACAGCCTAGTGCCTTTGCTGTTTGGAATTCGGTTCAGAAGTGGAAATCTGGTGTCCCTGCAAGGACTGGACTTATTCTTGCAGACCTCTCCTCAGGAGCCGAGAGTATTCCTGTATCGCTTGTCAATGAAGTGGATAACGTGAAGTCACCTGCctttttcacatattttcaCTCTCTTCGACATCCAAAATCATTTAGTTTAATGCAGCCTTCACATGGTTGCAGCTGTAATGCTAAAAAAGCATGTGTTCCTGGTGATTTGGATTGCTCTTGCATTAGGAGAAATGAAGGTGATTTTCCATATATTTCCAATAGCGTTCTGGTGAGTCGTAAGCCGTTGATTCATGAATGTGGCCCTACATGTCAATGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTAAAGCACCAAATGGAAGTGTTCAAAACAAGCAATAAGGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGTGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTAAAAGAAGGAGATACTGACGAGTATGTTTTCGATACAACTCGCATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGATACTGGAAGAAGTGAGCACAAATGAGTCTACTGAGGATTATGCTCTGCCGCATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCATGTATGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCCCCAATGCAAGAGTTAACATATGACTATGGATCTGAACGATCTGATAATGCTGAGGGTAGCAGTGCAAACAAAGGCAGAAAGAAATGCTTATGTGGATCACCAAAATGCCGCGGTTCTTTTACTTAA 1983 0.417 MDEGLGQNSVPPPGSIDKSKILDIKPIRSLIPVFSMNPQAPPSGQYPSGFSPFFPFGGPHDTSTTGVKRRAMPTPLRAFRSPLGEDEDFNDDFSNTGNEASRSSRVKPKKTKIYSDLHVDLSGLVGINPAHRDDGNREVVNIVLMTFDALRRRLSQLVDAKELSTGLVKRADLKVGNICMTKGIRTNVTKRVGAVPGVEIGDIFFFRMELCVVGLHAQSMGGIDALHITGAREEETLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHRGNLALDRSSRTHNEIRVIRGIKDAVNPNSKIYVYDGLYKIQDSWVEKAKGGGSLLKYKLIRVPGQPSAFAVWNSVQKWKSGVPARTGLILADLSSGAESIPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHGCSCNAKKACVPGDLDCSCIRRNEGDFPYISNSVLVSRKPLIHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTSNKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVKEGDTDEYVFDTTRIYESFKWNYEPKILEEVSTNESTEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVMYEENNQSFLHVAFFALRHIPPMQELTYDYGSERSDNAEGSSANKGRKKCLCGSPKCRGSFT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00176 660 Pfam SAD/SRA domain 192 345 IPR003105 -
Tsu03g00176 660 SUPERFAMILY PUA domain-like 175 363 IPR015947 -
Tsu03g00176 660 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 660 IPR025794 GO:0016571
Tsu03g00176 660 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 659 - -
Tsu03g00176 660 ProSiteProfiles Post-SET domain profile. 644 660 IPR003616 -
Tsu03g00176 660 ProSiteProfiles SET domain profile. 482 629 IPR001214 GO:0005515
Tsu03g00176 660 Gene3D - 175 361 IPR036987 -
Tsu03g00176 660 SUPERFAMILY SET domain 379 657 IPR046341 -
Tsu03g00176 660 SMART G9a_1 188 345 IPR003105 -
Tsu03g00176 660 Pfam SET domain 493 629 IPR001214 GO:0005515
Tsu03g00176 660 SMART preset_2 370 466 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu03g00176 660 Pfam Pre-SET motif 374 474 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu03g00176 660 ProSiteProfiles YDG domain profile. 193 341 IPR003105 -
Tsu03g00176 660 ProSiteProfiles Pre-SET domain profile. 416 479 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu03g00176 660 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g00176 660 MobiDBLite consensus disorder prediction 78 107 - -
Tsu03g00176 660 Gene3D SET domain 362 659 IPR046341 -
Tsu03g00176 660 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 659 - -
Tsu03g00176 660 SMART set_7 482 635 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00176 Tsu-Chr3 1439009 1440991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00176 6 659 Su(var)3-9 homologs AT1G73100 52.360 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu03g00176 SAD_SRA 2.2e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00176 03 1439009 1440991 Tsu08g01513 08 17662125 17693987 PCT