Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00155 ATGTCACCACAATTTTCTCTcactctttctcttctctttttcatCCTCTTAGCACCATTGTTACTCCTAGCTCAATCTCCTCCTCCTTCTGTTTCTCCTCCACCTTCTACTTCTTCGTCTGCCGCGTGCAAAGCGACATTGTATCCGAAACTATGTCGCTCGATGCTATCTACGATCCGTTCATCGCCATCCGATCCATATAACTATGGAAAATTCTCCATAAAACAAAACCTAAAACTAACAAGAAAACTAGCAAAAGTATTTTCTGATTTCCTCAAACGTCATCAATCATCTTCATCTTTAAACCATGAAGAGATTGGTGCATTAGTTGATTGTAATGATCTTAACCAACTCAATGTAGATTACTTAGAATCCATTTCTAATGAACTCAAATCTGCTACTACTTCATTATCAGATACAGAACTTGTTGATAAAATTGAAAGCTATCTTAGTGCTGTTACTACTAATCATTATACTTGTTTTGACGGTTTGGTTGTGACAAAAAGTAACATTGCTAATGCTCTTGCTGTTCCTTTGAAAGATGCTACACAATTTTACAGTGTTTCACTTGGTTTGGTCACTGAGGCTTtgaataaaaacatgaaaagaAATAAGACTCGCAAACATGGTCTTCCTAATAAGTCATTCAAGGTTAGGCAACCACTTGAGAAGCTCATCAAGTATCTCCGCACAAAGTATACTTGCAAAAATACATCAAATTGTACAAGTACTACAAGAACAGAAAGGATTCTTAAAGAAAGTGAAAGCCAAggaattttattaaatgattttgtgaTTGTGAGTCCTTATGGAATAGCAAACCACACTTCCATTGGAGATGCTATTGCTGCTGCACCAAATAACACACAGCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCTAAAGAAAAGAAGAATATTCTTCTAGTTGGAGATGGTATTAACAAGACAATCATCACAGGGAATCATAGTGTTATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGACATTACATTCAAAAACACAGCTGGTCCTGAAAAACATCAAGCAGTAGCAGTGAGAAACAATGCCGACCTATCGACATTCTACAGATGCAGTTTCGAAGGATATCAAGACACACTTTATGTTCACTCATTAAGACAATTCTATAGAGATTGCAAAATCTATGGCACAGTCGATTTCATTTTCGGCAATGCAGCTGTAGTTTTCCAGAATTGTAACATCTATGCTAGAAAACCAATGCAAAATCAGAAAAATGCTGTCACAGCACAAGGAAGAACTGATCCAAATCAAAACACAGGAATTTCAATCCAAAACTGTACTATTGATGCTACACCTGATTTGGCTAATGACTTGAATTCGACATCGAGTTACTTAGGTAGACCATGGAAGATTTATTCAAGAACTGTTTATATGCAATCATATATTGGTAATTTTGTTGATCCTTCTGGTTGGTTAGAGTGGAATGGAACACTTGGATTAGATACTATTTTTTATGGTGAGTTTGATAACTATGGACCTGGTTCTATAACTGATAATAGGGTTCAATGGCCtggttattttcttttgaatgatACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACATGGCTTCCTGATACAGATATACCTTACACTGAAGGGTTATTAAAGTAG 1740 0.346 MSPQFSLTLSLLFFILLAPLLLLAQSPPPSVSPPPSTSSSAACKATLYPKLCRSMLSTIRSSPSDPYNYGKFSIKQNLKLTRKLAKVFSDFLKRHQSSSSLNHEEIGALVDCNDLNQLNVDYLESISNELKSATTSLSDTELVDKIESYLSAVTTNHYTCFDGLVVTKSNIANALAVPLKDATQFYSVSLGLVTEALNKNMKRNKTRKHGLPNKSFKVRQPLEKLIKYLRTKYTCKNTSNCTSTTRTERILKESESQGILLNDFVIVSPYGIANHTSIGDAIAAAPNNTQPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFKNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPMQNQKNAVTAQGRTDPNQNTGISIQNCTIDATPDLANDLNSTSSYLGRPWKIYSRTVYMQSYIGNFVDPSGWLEWNGTLGLDTIFYGEFDNYGPGSITDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00155 579 PANTHER PECTINESTERASE 9 577 - -
Tsu03g00155 579 SMART PMEI_2 34 192 IPR006501 GO:0004857
Tsu03g00155 579 SUPERFAMILY Pectin lyase-like 263 576 IPR011050 -
Tsu03g00155 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 196 IPR035513 -
Tsu03g00155 579 Gene3D - 263 579 IPR012334 -
Tsu03g00155 579 Pfam Pectinesterase 265 562 IPR000070 GO:0030599|GO:0042545
Tsu03g00155 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 184 IPR006501 GO:0004857
Tsu03g00155 579 PANTHER PECTINESTERASE 9 577 - -
Tsu03g00155 579 Pfam Plant invertase/pectin methylesterase inhibitor 41 191 IPR006501 GO:0004857
Tsu03g00155 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Tsu03g00155 579 CDD PMEI-like_3 41 195 - -
Tsu03g00155 579 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00155 Tsu-Chr3 1289920 1294131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00155 5 578 Carbohydrate Esterase AT3G10720 57.724 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00155 03 1289920 1294131 Tsu08g01520 08 17817267 17821134 PCT