Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05042 ATGGATATAATGGATCCTTCTTGTGGACAAACTCAGCAAATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGCtcaaaagaagaacaagaaagGAAACCAAAACCTCAGCCAGAACATGCTTTGAATTGTCCAAGATGTAACTCAACCAACACCAAATTTTGTTACTACAACAATTATAGTCTTACTCAACCAAGATACTTTTGCAAATCTTGTAGAAGATATTGGACAAAAGGTGGAACATTAAGGAATGTTCCTGTTGGTGGTGGatgtagaaaaaataaaagatcatcatcatcttcatcttcaaagaGGGTTCAAGATCAAAACCAAACATTTAATCCTAATCTTAACCCTTTTAATAATCTTCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAACAATCATGTGGTGGACAAATGGGTTATGATGATAATGATCTTTCAATTTTGGGTAATCCTCAAAATCATGGATTTATGGATGCAATTAGAAGTGGTTTATTTCTTGGAAATggattacattataataataatgttcaAAATATTTATGGTGGATATGGAAATGGAGGAGATAATGGTGAAGTGAATAGTtgcaacaacaataataacaatgcTTGTGGGGTTAGTGAAGAGATTATGTTTCCTTATGATCAAGAAATGAACAATTGCATTGCAACAAATAGCATGAAGCAAGAACAAGGTGAAAGTAAAGTTTTTGGTGGTTTTCCATGGCAACTAAATGGAGGAACAAACATGGTTGAGCTTGAATCAACAAGAGCTAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGACTTCTTCATAGTCCCCTAAtgtag 873 0.3058 MDIMDPSCGQTQQMSSQSSMENMLGCSKEEQERKPKPQPEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRVQDQNQTFNPNLNPFNNLPHSSYDHNSNDFALALARLQKQSCGGQMGYDDNDLSILGNPQNHGFMDAIRSGLFLGNGLHYNNNVQNIYGGYGNGGDNGEVNSCNNNNNNACGVSEEIMFPYDQEMNNCIATNSMKQEQGESKVFGGFPWQLNGGTNMVELESTRASWNNGFTSPWQGLLHSPLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05042 290 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g05042 290 MobiDBLite consensus disorder prediction 88 126 - -
Tsu02g05042 290 MobiDBLite consensus disorder prediction 94 126 - -
Tsu02g05042 290 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Tsu02g05042 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 289 IPR045174 GO:0003700|GO:0006355
Tsu02g05042 290 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Tsu02g05042 290 MobiDBLite consensus disorder prediction 26 40 - -
Tsu02g05042 290 MobiDBLite consensus disorder prediction 1 44 - -
Tsu02g05042 290 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 10 289 - -
Tsu02g05042 290 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05042 Tsu-Chr2 59515022 59517424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05042 41 290 C2C2-Dof Transcription Factor Family AT2G28510 47.909 4.59e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g05042 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05042 - - gmx:778106 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05042 02 59515022 59517424 Tsu02g03528 02 39599948 39601918 PCT