Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04035 ATGGCTACGGTTGTTGCTGACATTTCAGCTGATGCAAACAAAATGGACTCAAAACCAAAGGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGTTGAATCCTTTGGCTAAAgagttttttccttcttcttatTCTCCTAATCATGATCAGACTCGTCAGGGTTATAATCTGCTTACTCCTAACAATTTTCTGGTTAATACTAAACCATCTGCTAATGATAATAACCCAAATAATCGAAGGAGGAGAAACAATTTTACTCAAGGGAGGAGAAGGGTGAATGGAAGATCACTAAAGGCTCAAAGGGAAGATAGCGTTAGAAGAACCGTATATGTCTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTTCAGATGAACATGGAGCAAGGGCTGCTTTGAACCTTGGTGGTACTGTGCTCGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGCACCCGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAgtgaagaatttttttgaatcagcTTGCGGCGAGGTTACACGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATTGTAAGTCTTCAATATACTATTACTAGTCAATACACTATCGATTATCTGCAACCTCTTCAATTTTGCTAG 843 0.3915 MATVVADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDQTRQGYNLLTPNNFLVNTKPSANDNNPNNRRRRNNFTQGRRRVNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFSDEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDQVHSTRIAFVEFAIVSLQYTITSQYTIDYLQPLQFC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04035 280 MobiDBLite consensus disorder prediction 67 87 - -
Tsu02g04035 280 SUPERFAMILY RNA-binding domain, RBD 112 256 IPR035979 GO:0003676
Tsu02g04035 280 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 13 258 - -
Tsu02g04035 280 Gene3D - 202 260 IPR012677 -
Tsu02g04035 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Tsu02g04035 280 SMART rrm1_1 113 183 IPR000504 GO:0003723
Tsu02g04035 280 SMART rrm1_1 210 280 IPR000504 GO:0003723
Tsu02g04035 280 MobiDBLite consensus disorder prediction 67 105 - -
Tsu02g04035 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 257 IPR000504 GO:0003723
Tsu02g04035 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Tsu02g04035 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 256 IPR000504 GO:0003723
Tsu02g04035 280 Gene3D - 70 188 IPR012677 -
Tsu02g04035 280 CDD RRM1_CID8_like 110 189 IPR034823 -
Tsu02g04035 280 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Tsu02g04035 280 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 13 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04035 Tsu-Chr2 47010573 47015551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04035 109 256 Eukaryotic Initiation Factors Gene Family AT1G34140 25.166 4.42e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04035 02 47010573 47015551 Tsu02g04035 02 47010573 47015551 ECH