Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03987 ATGCTGATATTAGTTGGAAACGTTCAAGGAACAATGAGTTATCTTGCTTCACCAGTGAGTTTAGGTAGTTTCAATGGTGTGAGTAGTTCAACTAGAATGTCACATTCTGTTGTTAGAAGAATTTCTGTTTCTAGAGGGAATTCTaataaagggaaaaaaagaTGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACTACAACTGATTTTATTGCTAACCAAGGAAATTCAGTTTCTCTTGATTCTACTAacattgatggtgataataaaGGTGGTGATAGTGGCGGTGTtggtgttggtggtggtggttttgTTCTTAAACCTCCTCCTAGGCCTGTTTTGAAGTCCTCTAGTAATGGTGTGGATGACAGGACTAAGGTGATTGAATCACTTGGAGATGTTTTGGAGAAGGCTGAAAAGCTTGAAAAACCTAAGTTGGATAGTGAAAGAAGTAACGGTTCGGTAAGTAAATCGGCAAGACCGGAGACGAATGTTAAAACGGATATAAATGTTAAACCTAAGGATGATAGTTCGTTACAAAAACAGAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGGGACTCGATTTCAAATGTGCAGAAATTTGTGAAGGAAGTACCTAAGCCTAATATCAAGAGAAGTGAAGTGGGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACATCTCAGTCTAATGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCCCCGCCACCTCCACCACCCCCGCCACTCGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTAAAAAAGACTGTTATCTTGAAGGATGATAAAGGGGAAGGTGAAACACCTGTTGTGTCTAAAGAAAGGAAGGGACCTATCTTGATTGATAAGTTTGCTTCAAAGAAACCGGAAGATGACACTGTGGTTGCTCGATCTGTTAGGGCTCCTGCTCCTCCGAAACCAGGGAAGGCCCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAGGAAAGGTGCTTCATCAGGGGCAGGACCAAGAAGACGAATGGCGGTGAATGATGATGATAGACCCAGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCTAGTCGTAGAGCCGTACGACTTCAGGCTGCCAGGGAAGCTGCTCCTGTAAAAGTTGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTGGCATATAATTTGGCGACCACTGAAGGTGAAATCCTCGGTTCTCTGTACTCCAAAGGAATTAAACCAGATGGGGTGCAAACTCTAGACAAGGATATGGTGAAGATGATTTGTAAAGAATATGAAGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACTTCGACAAACTTAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCGTGTGTTTTTCTCGACACTCCTGGGCATGAGGCATTTGGGGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTAttattgttgttgctgctgatgATGGTATTCGTCCTCAAACAAGTGAAGCTATAGCTCATGCCAACGCAGCAGGAGTACCCCTTATAATTGCTATAAACAAGatAGATAAAGATGGAGCAAATCCAGATCGAGTTATGCAAGAGCTTTCTTCAATTGGTCTGATGCCAGAAGACTGGGGGGGTGACGTCCCAATGGTTCAGATAAGTGCTCTTCAAGGACAGAATGTAGATGATCTTTTGGAAACAATTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATTGAGGCAGGTTTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGAACACTTAAAAGGGGTGATGTAGTAGTTTGTGGAGGATCTTTTGGAAAGGTGCGAGCTTTATTCGATGATGGTGGAAAGCGTGTGGATGAAGCTACACCTTCGATACCTGTACAGGTTATTGGATTGAATAATGTTCCAGTAGCTGGTGATGTATTTGAGGTTGTTGATTCCCTTGATACTGCGCGTGAAAAGGCAGAATCCCGTGTTATGTCATTGCGAGATGAGCGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCATTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCCGGATTAGACTTGCAccaattgaatattattttgaagGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCCCTGCAGGTGCTACCACAAGATAATGTCACACTGAAGTTTTTGATGGAAACAACAGGTGATGTAAGCACAAGTGACATTGATCTCGCGTATGCAAGCAAAGCGATCATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCCGATAATAAAGCCGTTGAGATAAGATTATATAAAGTTATTTATGAATTAATCGATGATGTGCGGCAAGCAATGGAAGGGCTCTTGGATTCTGTTGAGGAACAAGTACCAATTGGCTCAGCAGAAATACGGGCCGTATTCAGCAGTCGTAGTAGTCGTGTTGCTGGATGTATGGTCACAGAGGGAAAGGTTACAAAAGGATGTGGTATTCGAGTCGTTCGGAAGGGAAAAATAGTTCATGTTGGTGTTCTTGATTCGTTGAAACGAGTGAAAGAGATTGTTAAAGAGGTATGGCTGTGCTTTTAG 2910 0.4151 MLILVGNVQGTMSYLASPVSLGSFNGVSSSTRMSHSVVRRISVSRGNSNKGKKRWHCVSLSVCRYSVTTTDFIANQGNSVSLDSTNIDGDNKGGDSGGVGVGGGGFVLKPPPRPVLKSSSNGVDDRTKVIESLGDVLEKAEKLEKPKLDSERSNGSVSKSARPETNVKTDINVKPKDDSSLQKQKSKTLKSIWRKGDSISNVQKFVKEVPKPNIKRSEVGESQIVGGEKVTSQSNDPQPPSRPQPTLLSRPSIAPPPPPPPPLVKKPVILKDDRGQGETPVKKTVILKDDKGEGETPVVSKERKGPILIDKFASKKPEDDTVVARSVRAPAPPKPGKAPPQGRFKDDYRRKGASSGAGPRRRMAVNDDDRPSATRKGRKWSKASRRAVRLQAAREAAPVKVEILEVSDKGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVNRREILEEDDFDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTSEAIAHANAAGVPLIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDVPMVQISALQGQNVDDLLETIMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGGSFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPVAGDVFEVVDSLDTAREKAESRVMSLRDERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDIDLAYASKAIIFGFNVKAPGSVKSYADNKAVEIRLYKVIYELIDDVRQAMEGLLDSVEEQVPIGSAEIRAVFSSRSSRVAGCMVTEGKVTKGCGIRVVRKGKIVHVGVLDSLKRVKEIVKEVWLCF 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03987 969 Pfam Translation-initiation factor 2 796 889 IPR023115 -
Tsu02g03987 969 TIGRFAM IF-2: translation initiation factor IF-2 409 965 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Tsu02g03987 969 MobiDBLite consensus disorder prediction 362 376 - -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 267 323 - -
Tsu02g03987 969 PRINTS GTP-binding elongation factor signature 560 571 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 PRINTS GTP-binding elongation factor signature 596 605 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 PRINTS GTP-binding elongation factor signature 492 505 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 PRINTS GTP-binding elongation factor signature 544 554 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 CDD IF2_eIF5B 491 657 - -
Tsu02g03987 969 Gene3D - 485 663 IPR027417 -
Tsu02g03987 969 SUPERFAMILY Translation proteins 903 966 IPR009000 -
Tsu02g03987 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 664 IPR027417 -
Tsu02g03987 969 Pfam Elongation factor Tu GTP binding domain 493 653 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 TIGRFAM small_GTP: small GTP-binding protein domain 490 651 IPR005225 GO:0005525
Tsu02g03987 969 CDD IF2_mtIF2_II 668 760 IPR044145 -
Tsu02g03987 969 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 488 661 IPR000795 GO:0003924|GO:0005525
Tsu02g03987 969 MobiDBLite consensus disorder prediction 141 384 - -
Tsu02g03987 969 SUPERFAMILY Translation proteins 664 747 IPR009000 -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 153 167 - -
Tsu02g03987 969 Hamap Translation initiation factor IF-2 [infB]. 7 969 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Tsu02g03987 969 Gene3D Translation factors 901 966 - -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 78 123 - -
Tsu02g03987 969 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 965 - -
Tsu02g03987 969 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 965 IPR015760 -
Tsu02g03987 969 Gene3D Translation factors 664 780 - -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 238 266 - -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 169 184 - -
Tsu02g03987 969 CDD mtIF2_IVc 907 965 - -
Tsu02g03987 969 Coils Coil 747 767 - -
Tsu02g03987 969 MobiDBLite consensus disorder prediction 340 354 - -
Tsu02g03987 969 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 795 907 IPR036925 -
Tsu02g03987 969 Gene3D - 796 900 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03987 Tsu-Chr2 46324445 46331429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03987 489 961 Eukaryotic Initiation Factors Gene Family AT1G21160 26.344 2.18e-28 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03987 02 46324445 46331429 Tsu02g03987 02 46324445 46331429 ECH