Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03967 aTGAGCAATATAAGCATGGTAGAGGCAAAGCTTCCACCAGGATTCAGATTTCATCCTAGAGATGAAGAACTTGTTTGTGATTACTTGATGAAGAAGGTGACACATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAGCAGCATGTGTGGGAGGAAAAGAATGGTATTTCTATACACAAAGAGACCGAAAGTATGCAACAGGACTACGTACAAATCGTGCAACTGCATCAGGCTATTGGAAGGCAACTGGAAAAGACAGATCTATCCTTCGCAAGGGTACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGAAGAAAAACTGAATGGGTTATGCATGAATTTCGTATTGAAGGTCCTCATGGCCCTCCTaaagtttcttcttctaagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAATAGAGAAGTTGCTACAAAACCAAGCATGGGTAGTTGCTATGATGACACAGGATCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGATCAAGCTCAATTCCATACAGATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTTTctcaaaaccaaacaaaccctatCTTCAACCATATAACAACCAATAATATGGAACCAAAATTACCTACACCCAACAATAACAATGCAACTACATTTGGAGAAGCACCTTATAGCTTAGACCCTTTATCATGTGatagaaaagttttaaaagctGTTTTGAGTCAACTCTCAAAAATGGAAAGAAACCCtattaataatcaaattctAAAAGGGTCATCACCTAGCTTAGGAGAAGGAAGTTCTGAAAGTTACTTATCTGATGTGGGTATGCCCCACATGTGGAACAATTATTGA 921 0.3637 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSFLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKNREVATKPSMGSCYDDTGSSSLPALMDSYISFDQAQFHTDEFEQVPCFSIFSQNQTNPIFNHITTNNMEPKLPTPNNNNATTFGEAPYSLDPLSCDRKVLKAVLSQLSKMERNPINNQILKGSSPSLGEGSSESYLSDVGMPHMWNNY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03967 306 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 302 - -
Tsu02g03967 306 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Tsu02g03967 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 302 - -
Tsu02g03967 306 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Tsu02g03967 306 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Tsu02g03967 306 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03967 Tsu-Chr2 46077097 46084104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03967 2 304 NAC Transcription Factor Family AT1G56010 61.059 8.50e-132 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g03967 NAM 1.9e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03967 02 46077097 46084104 Tsu02g03967 02 46077097 46084104 ECH