Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03933 ATGGCGAAACCTGGCCGAGCTCGTCGCTCACCACCGTCGGGTTCCGTCTCCGGatcttcttctctctcctcTTCTTCTCGTTCCTCTCGCTCTCGCTCCCGCTCCCGTTCCAGATCCTTCTCATCCTCCTCATCTCCCTCCCGCAGTTCCAAGAGCCGTAGTCCTCCTCCTCAGAGACGGAAAAGTCCTGCTGAACCAGCTAGGCGAGGTCGATCTCCTCCTCTTCCTCCCCCTCCCCAGTCTAAGAGAACTTCTTCTCCCCCAAGGAAACCTTCTCCTGTACGAGAGTCTCTTGTTCTGCACGTTGAAAAACTCAGCAGGAATGTCAATGAAGGCCATCTGAAAGAAATCTTTAGTAATTTTGGTGAGGTTGCAAGTGTGGAGTTGGTGATGGATCGAGTTGTTAATCTTCCAAAAGGATATGGATATGTGCATTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGCGCGCAAATAGATGGCAACGTCATTAAGGCAAGATTTACTCTGCCTCCAAGACAGAGAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGTTCCAAAGAGAGAGGCGCCTAGGACTGATAATGCAGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCCAAGAGAATCTTCTCCCCGGAGGAAGCCTCTCTCACCACGGAGAAGATCTCCTGTGCCTCGAAGAGCCGGATCTCCAAGACGACCTGAATCTCCTCGCCGCCGTGCAGATTCTCCTATCCGTCGTCGACTAGATTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCCGTGTCTCCTGGAAAAGGTCGTTCTCCATCTCCACCACCAAGGCGCTTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGGAGCCCAGGTCGGAGACGTTCTCCTCCTCCAGCTCTAAGACGCCGTTCACCTCCTAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGTCGCTCTCCAATGCGTAGGTCTGCACGCTCACGCTCTAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTGAGACGGGGAAGGTCATCATCATACTCTGATTCACCAAGTCCTCGCAAGGTGTCTCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGCCAGTAGCAACAGTAGCAGCAGCGCTTCACCAGCCCCAGCTCGCAAACCATAG 1239 0.5262 MAKPGRARRSPPSGSVSGSSSLSSSSRSSRSRSRSRSRSFSSSSSPSRSSKSRSPPPQRRKSPAEPARRGRSPPLPPPPQSKRTSSPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVASVELVMDRVVNLPKGYGYVHFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQRVSPPPKASAVVPKREAPRTDNAGADVEKDGPKRPRESSPRRKPLSPRRRSPVPRRAGSPRRPESPRRRADSPIRRRLDSPYRRGAGDTPPRRRPVSPGKGRSPSPPPRRFRSPARVSPRRMRGSPGRRRSPPPALRRRSPPRRARSPPRRSPVGRRRSRSPMRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSASPAPARKP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03933 412 MobiDBLite consensus disorder prediction 293 363 - -
Tsu02g03933 412 SUPERFAMILY RNA-binding domain, RBD 86 184 IPR035979 GO:0003676
Tsu02g03933 412 SMART rrm1_1 99 172 IPR000504 GO:0003723
Tsu02g03933 412 MobiDBLite consensus disorder prediction 175 412 - -
Tsu02g03933 412 PANTHER BNAA09G56240D PROTEIN 1 393 - -
Tsu02g03933 412 MobiDBLite consensus disorder prediction 69 86 - -
Tsu02g03933 412 MobiDBLite consensus disorder prediction 392 412 - -
Tsu02g03933 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Tsu02g03933 412 CDD RRM_RNPS1 100 172 IPR034201 -
Tsu02g03933 412 MobiDBLite consensus disorder prediction 1 95 - -
Tsu02g03933 412 MobiDBLite consensus disorder prediction 198 223 - -
Tsu02g03933 412 MobiDBLite consensus disorder prediction 12 57 - -
Tsu02g03933 412 Gene3D - 16 182 IPR012677 -
Tsu02g03933 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Tsu02g03933 412 MobiDBLite consensus disorder prediction 239 269 - -
Tsu02g03933 412 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03933 Tsu-Chr2 45604940 45610318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03933 100 173 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 6.44e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03933 02 45604940 45610318 Tsu02g03933 02 45604940 45610318 ECH