Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03880 ATGGGTGTTAATGAAGATTTCAACATGGATCATAGTGAatatgttgttgatgatgatgatgatgttccacTTCCTGGATTTAGATTTCATCCTACTGATGAAGAACTTGTTACTTTTTATCTTAGAAGGAAACTTGATAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCAAGTGTACCTGGAGCAGAGAAAGAAGCATACTTTTTTTGCAAAAGAGGGAGAAAATATAAGAATAGCATAAGGCCAAATAGAGTAACTGGGTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATTTACTCAAATGGAGGAGAAGGAAATAATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGAAAAGGCACTAAAACTGATTGGATGATGCATGAATTTCGTCTACCATCTAAAATTATTGATGCCAATACAAATCTTCCATATGCTAAGAATTTTGATGTTGATAATGCTCATGAAGCTGAAATTTGGACATTGTGTagaattttcaaaagaaatgtATCACAAAGGAAACCACAAATGGCAGAGGTGAAAACCTTTACTACCAAACGTCAAGCCATTCAAGAAAAGAGAAGTAGAATGGACAACAATATGGAGTTCAACATAAATCAACAAACATATATCAATTTTGGTGCAATTCATGAGCAACATCACAATATTGAGGATAAACCAATTAATAACTATGAAATAAGTGATCAAAGGAATCAGTTTCATGTAGATCAGTTAAGCTCTTCAGTTGCACATCAAcctcaacaaaataataatgtaaCACAATGTTCAAATTTTTGGATTAACCAAGCTGCAAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 954 0.3124 MGVNEDFNMDHSEYVVDDDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVPGAEKEAYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNNCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKNFDVDNAHEAEIWTLCRIFKRNVSQRKPQMAEVKTFTTKRQAIQEKRSRMDNNMEFNINQQTYINFGAIHEQHHNIEDKPINNYEISDQRNQFHVDQLSSSVAHQPQQNNNVTQCSNFWINQAANELLSFDNWDELGSVVKFAVDSPSL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03880 317 SUPERFAMILY NAC domain 23 189 IPR036093 GO:0003677|GO:0006355
Tsu02g03880 317 Gene3D NAC domain 32 193 IPR036093 GO:0003677|GO:0006355
Tsu02g03880 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 315 - -
Tsu02g03880 317 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 16 315 - -
Tsu02g03880 317 ProSiteProfiles NAC domain profile. 23 189 IPR003441 GO:0003677|GO:0006355
Tsu02g03880 317 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03880 Tsu-Chr2 44807386 44809541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03880 16 189 NAC Transcription Factor Family AT5G39820 59.341 1.42e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g03880 NAM 1.4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03880 02 44807386 44809541 Tsu02g03880 02 44807386 44809541 ECH