Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03528 ATGGGGATGGATCCTTCTAATGGACAAAACCAGCAAATGTCTAACCAGTCACTGGAGAATATGTTAACTTGTTCCAAAACACAAGAAGACAAaaagccaaaacctcaaccagAAGCACTAAAATGTCCAAGATGTGACTCAAGCAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAATCATGTAGAAGATATTGGACAAAAGGAGGTACATTAAGAAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAagatcatcatcaacatcatcaaaaagaacTCAAGATCAAACATTTCCAACAAATCCAAATCCACTCACTTGTTTCCCTTCATTATCTTATGATACCAATGATCTTACACTTGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGATCATGAACatgatttttcttcaattttaggAAACCACACAAACATTAACACAAACACCTCATGTGCAATTCTTAACAATCATGGTATGAACAATTCTTCAAACAACCATGGATTCTTTGAAGCATTAATGGGATCTCAGAGCAATGTTCAGAATCTTTACTACACTGGAGAAGTAGATAATGGCAATGCTAATGGTGAAATGATGTTACCTTATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTGACAGTAACTACAATGAAACAAGAAATGTGTAATGTTAGGGAACAAAGTGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATTCTGACACAAACATGGCTGAAATTGACCACTCAGGAAGAGGTGGTTGGAATGGTCTCAATTCATCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 867 0.3414 MGMDPSNGQNQQMSNQSLENMLTCSKTQEDKKPKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSTSSKRTQDQTFPTNPNPLTCFPSLSYDTNDLTLALARLQKGHLGFDHEHDFSSILGNHTNINTNTSCAILNNHGMNNSSNNHGFFEALMGSQSNVQNLYYTGEVDNGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQSENRVLLGFPWQFNNSDTNMAEIDHSGRGGWNGLNSSWHGLLNSPLM 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03528 288 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g03528 288 MobiDBLite consensus disorder prediction 1 40 - -
Tsu02g03528 288 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Tsu02g03528 288 MobiDBLite consensus disorder prediction 91 111 - -
Tsu02g03528 288 MobiDBLite consensus disorder prediction 25 39 - -
Tsu02g03528 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 287 IPR045174 GO:0003700|GO:0006355
Tsu02g03528 288 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Tsu02g03528 288 MobiDBLite consensus disorder prediction 85 111 - -
Tsu02g03528 288 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 9 287 - -
Tsu02g03528 288 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03528 Tsu-Chr2 39599948 39601918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03528 3 288 C2C2-Dof Transcription Factor Family AT2G28510 40.317 4.70e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g03528 zf-Dof 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03528 - - gmx:100799737 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03528 02 39599948 39601918 Tsu02g03528 02 39599948 39601918 ECH
Tsu02g05042 02 59515022 59517424 Tsu02g03528 02 39599948 39601918 PCT