Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03089 ATGACAGAGGTTAAAGACCCTGCGATAAAGCTTTTTGGAAGGACAATTCCTCTTCCACTGATCATTCCTAatgattcttcttcatctccttcttcttctccgCCAGAATTGAGCTCTGCAATACAACAAGAAACTGAGGAACCGTCGAGGAAAGAACTCACGACAACACAAGATGATGATGCCTCACAACAGACCGCAGAGGATTTAAAGTCTCTCACAACATCTTCAGTCATAGTTGAGAATCCTCCTAAGACTCCCTCAGCTGAAACCGAGAATTCATTATTGAAATCTTCTACAAATGGAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTAAAGAAACCCGACAAAATAATTCCATGCCCGCGATGCAATAGTATGGACACCAAATTTTGTTACTTCAACAATTACAACGTCAACCAGCCTCGTCATTTTTGCAAAAAATGTCAAAGATACTGGACTGCAGGAGGAACGATGAGAAATGTTCCTGTTGGTGCTGGTCGCCGCAAGAACAAGAACTTATCTAGCTCGCATTATCGACACTTGATTATTCCAGAGGCCGCTAAACTTAATTCCCCTAATGGATTACATATGGGAAATGGAGCAGCTGTCTTGGCGTTTGATTCAGGTTCACCGCTTTGTAATACCATGGCTTCTGTATTGAACATAGCTGAGAGAACACAAAACTGTGTGCCAAATGGTTTTCATCATGCAAGCTCCTATGGTGGGGAAAATGGTCATTCGAACGGAGTTTCAGTTACAACTTCAACTTCATCAGAGAGGAAAGGCCACACTGACACAAATGGATCAGTGGATAAAAGAATTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCCTTTTGCCTTATCCATGGAGTTCTGCAATGCCTCCTCCTgcattttgtccaccaaactaTCCATTAGCATTCTATACTCCAGTAACTCCACCTGCATATTGGGGTTGTGTTCCACCACCATGGAATATGCCATGTATCTCATCAGAAACTGCTTCTGTTAACCACAGCGACTCTGCTCATAGTTCTGTCCCATATTCACCTACTTTGGGGAAACATTCAAGAGATGGCACCATCATTACCTCAGTCAACTCACAAAAAGAAAAGCCGGATAACGAACACAATAATACCGAAAGTAGTGTTTTGATCCCGAAAACACTTAGATTTGACGACCCAAATGAAGCCGCAAAGAGTTCATTATGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTATCAATGGAGGAGGCATGTTCAATGGATTTCAATCCAAAGGAAAGGACATGAATCACTCGGTCGAAGCGTCGCCGCTGATGTATGCTAACCCTGCAGCTTTATCGCGGTCCCGTACCTTCCACGAGGGAACCTAA 1401 0.4133 MTEVKDPAIKLFGRTIPLPLIIPNDSSSSPSSSPPELSSAIQQETEEPSRKELTTTQDDDASQQTAEDLKSLTTSSVIVENPPKTPSAETENSLLKSSTNGEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLIIPEAAKLNSPNGLHMGNGAAVLAFDSGSPLCNTMASVLNIAERTQNCVPNGFHHASSYGGENGHSNGVSVTTSTSSERKGHTDTNGSVDKRIEGFPPQLQYIPSPLLPYPWSSAMPPPAFCPPNYPLAFYTPVTPPAYWGCVPPPWNMPCISSETASVNHSDSAHSSVPYSPTLGKHSRDGTIITSVNSQKEKPDNEHNNTESSVLIPKTLRFDDPNEAAKSSLWSKLGINNDKANSINGGGMFNGFQSKGKDMNHSVEASPLMYANPAALSRSRTFHEGT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03089 466 MobiDBLite consensus disorder prediction 21 44 - -
Tsu02g03089 466 PANTHER CYCLIC DOF FACTOR 2 1 464 IPR045174 GO:0003700|GO:0006355
Tsu02g03089 466 MobiDBLite consensus disorder prediction 15 114 - -
Tsu02g03089 466 MobiDBLite consensus disorder prediction 58 107 - -
Tsu02g03089 466 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Tsu02g03089 466 MobiDBLite consensus disorder prediction 243 277 - -
Tsu02g03089 466 MobiDBLite consensus disorder prediction 344 365 - -
Tsu02g03089 466 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Tsu02g03089 466 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 464 - -
Tsu02g03089 466 MobiDBLite consensus disorder prediction 244 266 - -
Tsu02g03089 466 Pfam Dof domain, zinc finger 119 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03089 Tsu-Chr2 34362775 34365809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03089 4 464 C2C2-Dof Transcription Factor Family AT5G39660 38.780 1.24e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu02g03089 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03089 - - gmx:100813315 549.28